Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0225
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical pr...    84   8e-17
U66216-1|AAB07465.1|  128|Caenorhabditis elegans RAN/Tc4 protein.      64   7e-11
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical pr...    27   9.9  
Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    27   9.9  
AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z92803-6|CAB07240.1|  215|Caenorhabditis elegans Hypothetical
           protein K01G5.4 protein.
          Length = 215

 Score = 84.2 bits (199), Expect = 8e-17
 Identities = 38/57 (66%), Positives = 44/57 (77%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 538
           PFLWLARKL+GD NLEFVAMPAL PPEV MDP    + EKDL +A    LP++D+DL
Sbjct: 159 PFLWLARKLLGDPNLEFVAMPALAPPEVQMDPAMIAEYEKDLDNAAKADLPDDDDDL 215


>U66216-1|AAB07465.1|  128|Caenorhabditis elegans RAN/Tc4 protein.
          Length = 128

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 28/32 (87%), Positives = 29/32 (90%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDP 613
           PFLWLARKL+GD NLEFVAMPAL PPEV MDP
Sbjct: 93  PFLWLARKLLGDPNLEFVAMPALAPPEVQMDP 124


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 69  QSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINNSDQIGIN-TYWAINAKC 236
           +S+H++K+  +   +  CV++ L+   + +  + M  INN D +  N +   +N  C
Sbjct: 479 KSIHLSKI--SVVSVFACVWIFLIASHVMFSIMQMNAINNLDALFSNLSKGRVNLSC 533


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +3

Query: 69  QSLHVTKVRNNFKIIILCVYMLLVYKELSYKFVYMCIINNSDQIGIN-TYWAINAKC 236
           +S+H++K+  +   +  CV++ L+   + +  + M  INN D +  N +   +N  C
Sbjct: 479 KSIHLSKI--SVVSVFACVWIFLIASHVMFSIMQMNAINNLDALFSNLSKGRVNLSC 533


>Z66494-6|CAE48497.1|  423|Caenorhabditis elegans Hypothetical
           protein C34C6.5b protein.
          Length = 423

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 573 QNTALPEEDEDL*I*STDVPSAIL*LEDHANVFSV 469
           QN  LP+ DE L + S+D+   ++  ++  N+++V
Sbjct: 286 QNWTLPDSDETLAVGSSDLEETVVIEDNFVNIYAV 320


>Z66494-5|CAA91259.1|  473|Caenorhabditis elegans Hypothetical
           protein C34C6.5a protein.
          Length = 473

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 573 QNTALPEEDEDL*I*STDVPSAIL*LEDHANVFSV 469
           QN  LP+ DE L + S+D+   ++  ++  N+++V
Sbjct: 336 QNWTLPDSDETLAVGSSDLEETVVIEDNFVNIYAV 370


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +3

Query: 45  FNFSVKYCQSLHVTKVRNNFKIIILCVYM 131
           FNF  K C S ++T+ RN   ++ +C+Y+
Sbjct: 106 FNF-YKMCVSRNLTRGRNRSSVVAVCMYI 133


>AF026210-3|AAB71286.3|  382|Caenorhabditis elegans Hypothetical
           protein F48A11.4 protein.
          Length = 382

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = +1

Query: 424 VHLRSPNGMKKFSVRYTEHICMILQSQNGTGYIR*SYL*VFIFLRKSSILCILKIFFNL 600
           + + +PN   +   R +  IC +    N    +R  +L +   L   +I CI+   F+L
Sbjct: 276 IEMANPNARMRVITRPSSVICTVFAVNNSQAPLRSQFLKLRTILHNPNIKCIIYSCFHL 334


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,502,465
Number of Sequences: 27780
Number of extensions: 364760
Number of successful extensions: 961
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)