Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0225
         (708 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   3.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.7  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.7  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 618 DPQWQNQIEKDLQDA 574
           + +W+N+ E D QDA
Sbjct: 343 EEEWENENESDYQDA 357


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 544 RLINMINGCTQCHFVIGGSCKCVQC 470
           +L+N  NG  +        CKC++C
Sbjct: 116 KLMNEENGVMEIKIREPVECKCIKC 140


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 544 RLINMINGCTQCHFVIGGSCKCVQC 470
           +L+N  NG  +        CKC++C
Sbjct: 116 KLMNEENGVMEIKIREPVECKCIKC 140


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,670
Number of Sequences: 438
Number of extensions: 4253
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21804885
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)