Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0225
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3) ...    65   5e-11
At5g20020.1 68418.m02382 Ras-related GTP-binding nuclear protein...    64   7e-11
At5g20010.1 68418.m02381 Ras-related GTP-binding nuclear protein...    62   5e-10
At5g55080.1 68418.m06866 Ras-related GTP-binding protein, putati...    31   0.99 
At1g74770.1 68414.m08663 expressed protein                             30   1.7  
At3g24506.1 68416.m03075 expressed protein                             27   9.2  

>At5g55190.1 68418.m06880 Ras-related GTP-binding protein (RAN3)
           identical to atran3 [Arabidopsis thaliana] GI:2058280
          Length = 221

 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 31/56 (55%), Positives = 38/56 (67%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 541
           PFL+LARKL GD NL FV  PAL PPEV +D   Q Q E +L  A +  LP++D+D
Sbjct: 163 PFLYLARKLAGDANLHFVESPALAPPEVQIDLAAQQQHEAELAAAASQPLPDDDDD 218


>At5g20020.1 68418.m02382 Ras-related GTP-binding nuclear protein
           (RAN-2) identical to GTP-binding nuclear protein RAN-2
           SP:P41917 from [Arabidopsis thaliana]
          Length = 221

 Score = 64.5 bits (150), Expect = 7e-11
 Identities = 32/56 (57%), Positives = 37/56 (66%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDED 541
           PFL+LARKL GD NL FV  PAL PPEV +D   Q Q E DL  A    LP++D+D
Sbjct: 163 PFLYLARKLAGDQNLHFVESPALAPPEVHLDIAAQQQNEADLAAAAAQPLPDDDDD 218


>At5g20010.1 68418.m02381 Ras-related GTP-binding nuclear protein
           (RAN-1) identical to GTP-binding nuclear protein RAN-1
           SP:P41916 from [Arabidopsis thaliana]
          Length = 221

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 30/57 (52%), Positives = 38/57 (66%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPEEDEDL 538
           PFL+LARKL GD NL FV  PAL PPEV +D   Q + E +L  A    LP++D+D+
Sbjct: 163 PFLYLARKLAGDQNLHFVETPALAPPEVHIDIADQQKNEAELLQAAAQPLPDDDDDI 219


>At5g55080.1 68418.m06866 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein atran3 GI:2058280 from
           [Arabidopsis thaliana]
          Length = 222

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 708 PFLWLARKLIGDGNLEFVAMP 646
           PFL+LAR++ GD  L FV  P
Sbjct: 163 PFLYLARRIAGDAKLSFVESP 183


>At1g74770.1 68414.m08663 expressed protein
          Length = 985

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -1

Query: 609 WQNQIEKDLQDAQNTALPEEDEDL*I*STDVPSAIL-*LEDHANVFSVAYTKFFHSI 442
           +QN IEKDL+D Q      + + L I   DV  A L  L D    +S A+ KFFH +
Sbjct: 303 FQNAIEKDLRDIQEGLCQAKFQTL-ILDLDVLMARLNFLADVLVSYSNAFKKFFHPV 358


>At3g24506.1 68416.m03075 expressed protein
          Length = 149

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = -1

Query: 663 EFVAMPALLPPEVTMDPQWQNQIEKDLQDAQNTALPE-EDED 541
           +F  M + LPP +  DP  + + E++ ++ +    PE EDED
Sbjct: 102 KFSPMKSPLPPPMPYDPPEEEEEEEEKKEEETEDDPEKEDED 143


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,840
Number of Sequences: 28952
Number of extensions: 303771
Number of successful extensions: 700
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)