Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0223
         (457 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    27   1.0  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    27   1.4  
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom...    25   5.5  
SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC su...    24   9.6  

>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 27.5 bits (58), Expect = 1.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -1

Query: 436 YLKRREDPIEFCNLFCKYFYFYISIIL 356
           + K  E+P+EF   F KYF F + +++
Sbjct: 277 HAKSEEEPLEFSYFFHKYFTFPLRLLI 303


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 436 YLKRREDPIEFCNLFCKYFYFYISIILNY 350
           +LKR   P+   N +C   YFY S I  Y
Sbjct: 5   FLKRLRAPLYIQNAYCSKNYFYRSFIQYY 33


>SPBC21C3.07c |||actin binding methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 281

 Score = 25.0 bits (52), Expect = 5.5
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 254 YLRDNSVIFFFSSNKKKSLRPRCWIKIKFK 165
           Y+R +       + KK+    RCW++ KF+
Sbjct: 251 YIRGDGTRVLIVNRKKRVKMYRCWLQAKFQ 280


>SPAC17H9.20 |psc3|SPAC607.01|mitotic cohesin complex, non-SMC
           subunit Psc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 24.2 bits (50), Expect = 9.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 439 NYLKRREDPIEFCNLFCKYFYFYISIIL 356
           NY    +DPI+    FCK   F  SI+L
Sbjct: 540 NYTSTLKDPIDSILSFCKLNDFQESILL 567


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,451,877
Number of Sequences: 5004
Number of extensions: 24801
Number of successful extensions: 43
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)