Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0223
         (457 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine r...    27   6.5  

>Z74039-1|CAA98503.1|  451|Caenorhabditis elegans Hypothetical
           protein K03B8.1 protein.
          Length = 451

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 439 NYLKRREDPIEFCNLFCKYFYFY--ISIILNYFVGVIKKFN 323
           N +K R + +E   +F +YFYF+  +SI+L Y   + K  N
Sbjct: 10  NCIKYRSENLEKSKMFYQYFYFHLTLSIVLIYGSDIGKDAN 50


>AF016685-16|AAG24152.2|  328|Caenorhabditis elegans Serpentine
           receptor, class x protein1 protein.
          Length = 328

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 171 FYLNPTSRSQTFLFI*TKKKNYAVIPKVFFLLINKIGSFNHLLM 302
           FYL PT    +F+F   +  N  V     F+++  IG+   ++M
Sbjct: 64  FYLAPTIILNSFIFSDERNGNLTVFISFIFMVLWYIGNITQIVM 107


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,945
Number of Sequences: 27780
Number of extensions: 132515
Number of successful extensions: 215
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 809909048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)