Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0223
         (457 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g25757.1 68418.m03055 expressed protein                             27   6.0  
At5g25754.1 68418.m03054 expressed protein                             27   6.0  
At4g31600.1 68417.m04489 UDP-glucuronic acid/UDP-N-acetylgalacto...    27   7.9  

>At5g25757.1 68418.m03055 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 403 CNLFCKYFYFYISIILNYFVGVIKKFN*LFLIVYINK 293
           C++   Y Y + +++L  +V  +++FN + L ++  K
Sbjct: 264 CHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKTK 300


>At5g25754.1 68418.m03054 expressed protein
          Length = 514

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 403 CNLFCKYFYFYISIILNYFVGVIKKFN*LFLIVYINK 293
           C++   Y Y + +++L  +V  +++FN + L ++  K
Sbjct: 264 CHIATIYHYGFATLMLRRYVDAVREFNKILLYIFKTK 300


>At4g31600.1 68417.m04489 UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter-related
           contains weak similarity to UDP-glucuronic
           acid/UDP-N-acetylgalactosamine transporter (UDP-
           GlcA/UDP-GalNAc transporter) (Swiss-Prot:Q9NTN3) [Homo
           sapiens]
          Length = 323

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 391 CKYFYFYISIILNYFVGVIKKFN*LFLIVYINK*LNDPIL 272
           C Y  F + +IL+  +G++  F  +FL   +N  L   I+
Sbjct: 222 CSYLPFLVILILSLVMGIVLNFT-MFLCTIVNSALTTTIV 260


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,957,216
Number of Sequences: 28952
Number of extensions: 108752
Number of successful extensions: 157
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 752336160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)