Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0221
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 31 0.13
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 28 1.2
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 27 2.8
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa... 27 2.8
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma... 26 4.9
SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr... 25 6.4
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 6.4
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 25 8.5
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 25 8.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 25 8.5
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 31.1 bits (67), Expect = 0.13
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 389 HNTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTRE 496
+++ YN+ M TS+C+C++ + YGGN A E
Sbjct: 47 YSSTYNEITNMDTSSCSCSSTPK-SYGGNLAPFDEE 81
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 27.9 bits (59), Expect = 1.2
Identities = 8/38 (21%), Positives = 22/38 (57%)
Frame = +3
Query: 75 SIVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYF 188
+I+ V+N I+D+ + ++C ++W G ++ ++
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/32 (28%), Positives = 20/32 (62%)
Frame = +2
Query: 386 AHNTKYNQYLKMSTSTCNCNARDRVVYGGNSA 481
+HN +N + + S ++ + +R+ V+ GNS+
Sbjct: 616 SHNEMFNSFHRSSVTSASIKSREAVLSAGNSS 647
>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 889
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 78 IVQNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVK 179
+++++ NL I N +EY LW NG I K
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480
>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
2|||Manual
Length = 918
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 5/40 (12%)
Frame = -2
Query: 191 WEVLFDNILS--VADPQL---VAVLHGVPSLVNDQIVNYI 87
W+VLF + L+ ++ P V LHGV + VN + +YI
Sbjct: 188 WDVLFHDYLNETLSQPAFSFNVPDLHGVDNKVNQYVFDYI 227
>SPCC1322.16 |phb2||prohibitin Phb2|Schizosaccharomyces pombe|chr
3|||Manual
Length = 279
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 531 RPVLHLQPRIQRCLGARYDRERL 599
RP +H P+I R LG YD L
Sbjct: 106 RPDVHALPKIYRTLGGDYDERVL 128
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +2
Query: 242 KLQPPLKLGSTTNPSNERIAYGDGV 316
K P K+G NPS+ + Y DG+
Sbjct: 361 KFSKPSKIGLLNNPSSSILPYQDGL 385
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = +2
Query: 368 NRVYFKAHNTKYNQYLKMSTSTCNCNA 448
+R +F + KYN+ + TST NA
Sbjct: 35 SRTFFSPTHIKYNRLSTLDTSTSTANA 61
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 25.0 bits (52), Expect = 8.5
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = -1
Query: 579 ELQGIVEFAVVDEEQDVVFVLGGLKNHGSLVLSALLPPYTTRSRALQLQVDVLIFK 412
++Q FA + +EQ + L L NH +VLS + + ++ +D + K
Sbjct: 337 QIQACPLFASLPQEQQLQVFLPALANHRKVVLSTNIAETSVTISGIRYVIDTGLAK 392
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 215 RKLRQAHLQKLQPPLKLGSTTNPSNE 292
R+L+Q H +KL L+ T PS+E
Sbjct: 988 RRLKQMHWEKLNSGLEFTFWTGPSDE 1013
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,266,225
Number of Sequences: 5004
Number of extensions: 44063
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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