Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0221
         (603 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0239 + 13384451-13387124,13387234-13387631                       31   0.70 
10_07_0057 + 12460986-12461036,12461108-12461161,12461420-124614...    29   3.7  
09_06_0158 + 21278519-21278817,21279190-21279379,21280901-21281269     28   6.5  
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    28   6.5  

>06_02_0239 + 13384451-13387124,13387234-13387631
          Length = 1023

 Score = 31.1 bits (67), Expect = 0.70
 Identities = 20/90 (22%), Positives = 43/90 (47%)
 Frame = +3

Query: 84  QNVVNNLIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIYRNYNLL*S 263
           +N++  ++ D   N      +L+VG  +  +  Y P S   + +   + L+  +YNLL  
Sbjct: 361 ENLIEGILPDSIGNLSSSLTRLYVGGNR--ITGYIPASIGRLSS---LTLLNMSYNLLFG 415

Query: 264 SVPQPIPRMRELPTAMVLTSTLNSSVGSSL 353
           S+P  I  ++EL    +  + L+  + + +
Sbjct: 416 SIPPEIGLLKELTMLSLARNKLSGIIPAEI 445


>10_07_0057 +
           12460986-12461036,12461108-12461161,12461420-12461482,
           12461666-12461716,12461996-12462057,12462156-12462318,
           12462829-12462939,12463029-12463166,12463248-12463322,
           12463420-12463540,12464827-12464981,12465080-12465154,
           12465270-12465473,12465670-12465786
          Length = 479

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 16/36 (44%), Positives = 22/36 (61%)
 Frame = -3

Query: 211 MMSLKLNGKYFLTISCPLPTHSL*QYSMVFRLLSMI 104
           MM L + GK    I CP+P+HSL   SMV R  +++
Sbjct: 152 MMHLLIRGKKD-GILCPIPSHSLYTDSMVLRGATLV 186


>09_06_0158 + 21278519-21278817,21279190-21279379,21280901-21281269
          Length = 285

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/63 (28%), Positives = 26/63 (41%)
 Frame = +2

Query: 206 HHGRKLRQAHLQKLQPPLKLGSTTNPSNERIAYGDGVDKHTELVSWKFITLWENNRVYFK 385
           HHG       +    PP  LGS   P +  +    GV    E+ SW  I+  +N   + +
Sbjct: 117 HHGAPSPATMMDSSAPPWHLGS---PIDGGLG---GVSASAEVCSWHLISSTQNKSSFSE 170

Query: 386 AHN 394
            HN
Sbjct: 171 EHN 173


>08_02_1508 +
           27602104-27602265,27602398-27602449,27603357-27604757,
           27604833-27606140,27606594-27607435
          Length = 1254

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 251 PPLKLGSTTNPSNERIAYGDGVDKHTE 331
           PP KL +   P N  +A  +GVDK T+
Sbjct: 704 PPTKLAAPDAPRNVGLAKTEGVDKRTQ 730


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,672
Number of Sequences: 37544
Number of extensions: 303725
Number of successful extensions: 931
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 931
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)