Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0221
         (603 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical...    29   2.6  
AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical ...    28   4.5  
AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical ...    28   5.9  
AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical ...    28   5.9  
U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical p...    27   7.8  

>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
           protein Y111B2A.14 protein.
          Length = 1481

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 164 TGYCQKVLPIKL*THHGRKLRQAHLQKLQPPLKLGSTTNPSN 289
           TG+ + V  +K+     RK  +  L KL  PLK+G  T  SN
Sbjct: 489 TGWLKDVNQLKMNADQARKKLKTLLTKLGFPLKIGKFTRKSN 530


>AF016670-8|AAB66101.1|  783|Caenorhabditis elegans Hypothetical
           protein K02F6.1 protein.
          Length = 783

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = +3

Query: 141 YKLWVGNGQDIVKKYFPLSFRLIMAGNYVKLIY---RNYNLL*SSVPQPIPRMRELPTAM 311
           +K+   NG +I  K   L +  +    Y + +Y   RN NLL +S  +  P+MR+    M
Sbjct: 400 HKICCANGTEIAVKGRVLVWFKVKGVEYTEYVYVWNRNNNLLGTSWMRHSPQMRDALAVM 459

Query: 312 V-LTSTLNSSVGSS 350
           V   ST+++S  +S
Sbjct: 460 VNHISTVDNSKQNS 473


>AL032654-5|CAD91715.2|  516|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3b protein.
          Length = 516

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 504 NHGSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVMNFQLTSSV 325
           NH +L+ S  LP +TT    +   V + I K  +    W  K+ L+F + V+    T   
Sbjct: 263 NHDTLIFSLQLPEHTTYRIPIGHHVSIKIRKGSMGKFSW--KFFLIFGYSVLYRPYTP-- 318

Query: 324 CLSTPSP 304
            +S P P
Sbjct: 319 -ISNPDP 324


>AL032654-4|CAA21721.2|  552|Caenorhabditis elegans Hypothetical
           protein Y52B11A.3a protein.
          Length = 552

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/67 (29%), Positives = 31/67 (46%)
 Frame = -1

Query: 504 NHGSLVLSALLPPYTTRSRALQLQVDVLIFKYWLYLVLWALKYTLLFSHKVMNFQLTSSV 325
           NH +L+ S  LP +TT    +   V + I K  +    W  K+ L+F + V+    T   
Sbjct: 299 NHDTLIFSLQLPEHTTYRIPIGHHVSIKIRKGSMGKFSW--KFFLIFGYSVLYRPYTP-- 354

Query: 324 CLSTPSP 304
            +S P P
Sbjct: 355 -ISNPDP 360


>U49830-13|AAK31474.1|  826|Caenorhabditis elegans Hypothetical
           protein C33F10.2 protein.
          Length = 826

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 7/28 (25%), Positives = 18/28 (64%)
 Frame = +3

Query: 126 TMEYCYKLWVGNGQDIVKKYFPLSFRLI 209
           T  YC+K ++ +  +++K+Y  + + L+
Sbjct: 557 TYRYCHKFYLKDNSEVIKEYLGIFYHLV 584


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,733,074
Number of Sequences: 27780
Number of extensions: 255247
Number of successful extensions: 734
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)