Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0221
(603 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive... 24 1.00
DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chlor... 24 1.3
DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex det... 23 1.7
DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex det... 23 1.7
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 23 2.3
DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex det... 23 2.3
AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex det... 23 2.3
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 23 2.3
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 23 3.0
DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated... 22 5.3
DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chlor... 21 7.0
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 21 9.3
>AF004169-1|AAC13418.1| 371|Apis mellifera ultraviolet-sensitive
opsin protein.
Length = 371
Score = 24.2 bits (50), Expect = 1.00
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 7/66 (10%)
Frame = -1
Query: 558 FAVVDEEQDVVFVLGGLKNHGSLVLSALLP--PYTTRSRAL-----QLQVDVLIFKYWLY 400
FA+ + + V+G L G+ + +A + Y+T +R L + QV + I W Y
Sbjct: 113 FALGNLGCQIFAVIGSLTGIGAAITNAAIAYDRYSTIARPLDGKLSRGQVILFIVLIWTY 172
Query: 399 LVLWAL 382
+ WAL
Sbjct: 173 TIPWAL 178
>DQ667186-1|ABG75738.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 23.8 bits (49), Expect = 1.3
Identities = 14/46 (30%), Positives = 21/46 (45%)
Frame = +3
Query: 12 LTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 149
+ G YD+ +R S E + G + N+ I TMEY +L
Sbjct: 39 ILGGYDARIRPSGENATDGPAVVRVNIFVRSISKIDDVTMEYSVQL 84
>DQ325132-1|ABD14146.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 219 NYVKLIYRNYNLL*SSVPQPIP 284
NY KL Y+NY + +P P+P
Sbjct: 112 NYKKL-YKNYIINIEQIPVPVP 132
>DQ325131-1|ABD14145.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.4 bits (48), Expect = 1.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 219 NYVKLIYRNYNLL*SSVPQPIP 284
NY KL Y+NY + +P P+P
Sbjct: 112 NYKKL-YKNYIINIEQIPVPVP 132
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 228 KLIYRNYNLL*SSVPQPIP 284
KL Y+NY + +P P+P
Sbjct: 103 KLYYKNYIINIEQIPVPVP 121
>DQ325083-1|ABD14097.1| 189|Apis mellifera complementary sex
determiner protein.
Length = 189
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 228 KLIYRNYNLL*SSVPQPIP 284
KL Y+NY + +P P+P
Sbjct: 114 KLYYKNYIINIEQIPVPVP 132
>AY569705-1|AAS86658.1| 419|Apis mellifera complementary sex
determiner protein.
Length = 419
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 228 KLIYRNYNLL*SSVPQPIP 284
KL Y+NY + +P P+P
Sbjct: 344 KLYYKNYIINIEQIPVPVP 362
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 23.0 bits (47), Expect = 2.3
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +3
Query: 228 KLIYRNYNLL*SSVPQPIP 284
KL Y+NY + +P P+P
Sbjct: 339 KLYYKNYIINIEQIPVPVP 357
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 22.6 bits (46), Expect = 3.0
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 219 NYVKLIYRNYNLL*SSVPQPIP 284
NY KL Y N+ VP P+P
Sbjct: 348 NYKKLYYNIINIEQIPVPVPVP 369
>DQ667194-1|ABG75746.1| 391|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 391
Score = 21.8 bits (44), Expect = 5.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 403 QPVLEDEYVDLQLQRSG 453
+PV+ +E VD L++SG
Sbjct: 168 KPVVAEETVDYMLEKSG 184
>DQ667185-1|ABG75737.1| 447|Apis mellifera glutamate-gated chloride
channel protein.
Length = 447
Score = 21.4 bits (43), Expect = 7.0
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +3
Query: 12 LTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRRNTMEYCYKL 149
+ G YD+ +R S E + G + N+ I MEY +L
Sbjct: 39 ILGGYDARIRPSGENATDGPAIVRVNLFVRSIATISDIKMEYSVQL 84
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 21.0 bits (42), Expect = 9.3
Identities = 7/13 (53%), Positives = 10/13 (76%)
Frame = +2
Query: 308 DGVDKHTELVSWK 346
D +D+HT V+WK
Sbjct: 986 DDLDQHTLKVTWK 998
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,098
Number of Sequences: 438
Number of extensions: 3497
Number of successful extensions: 13
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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