Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0221
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g64255.1 68414.m07280 SWIM zinc finger family protein contain...    35   0.048
At1g64260.1 68414.m07281 zinc finger protein-related contains Pf...    30   1.0  
At5g59210.2 68418.m07421 myosin heavy chain-related contains wea...    27   9.6  
At5g59210.1 68418.m07420 myosin heavy chain-related contains wea...    27   9.6  
At4g02190.1 68417.m00291 DC1 domain-containing protein contains ...    27   9.6  
At1g49920.1 68414.m05598 zinc finger protein-related weak simila...    27   9.6  

>At1g64255.1 68414.m07280 SWIM zinc finger family protein contains
           Pfam profile PF04434: SWIM zinc finger
          Length = 750

 Score = 34.7 bits (76), Expect = 0.048
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +3

Query: 102 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 200
           +++D +    EY  KL + +G D   KYFPL+F
Sbjct: 386 IVVDTKNLNCEYQLKLMIASGVDAANKYFPLAF 418


>At1g64260.1 68414.m07281 zinc finger protein-related contains Pfam
           profiles PF03108: MuDR family transposase, PF04434: SWIM
           zinc finger
          Length = 719

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 102 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 200
           +++D +    +Y  KL + +G D   K+FPL+F
Sbjct: 379 IVVDTKSLNGKYQLKLMIASGVDAANKFFPLAF 411


>At5g59210.2 68418.m07421 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 433

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 3   NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 122
           NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 304 NSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 343


>At5g59210.1 68418.m07420 myosin heavy chain-related contains weak
           similarity to Myosin heavy chain, gizzard smooth muscle
           (Swiss-Prot:P10587) [Gallus gallus]
          Length = 434

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 13/40 (32%), Positives = 23/40 (57%)
 Frame = +3

Query: 3   NSILTGDYDSAVRKSLEYESQGQGSIVQNVVNNLIIDKRR 122
           NS L+  Y  ++  S ++E+Q +  + QNV    ++DK R
Sbjct: 305 NSNLSASYQESINISNQWENQVKECLKQNVELREVLDKLR 344


>At4g02190.1 68417.m00291 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 659

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +2

Query: 77  HRSKCS*QSDH*QETEHHGVLLQAVGRQRTGYCQKV-LPIK-L*THHGRKLRQAHLQKLQ 250
           H+      S+  +   H G  LQ + +Q+  YC      IK L  H G      +  K  
Sbjct: 48  HKKCVDEASESIEHPSHPGHTLQLLSKQKYRYCNLCGRDIKDLCYHFGNFDVDLYCAKYP 107

Query: 251 PPLKLGSTTNPSNERIAYGDGVDKHTE 331
           PP  + S+  P ++R    + ++ H +
Sbjct: 108 PPEVIESSETPCHKRTLLKEKIEFHCD 134


>At1g49920.1 68414.m05598 zinc finger protein-related weak
           similarity to mudrA [Zea mays] GI:540581, MURAZC [Zea
           mays] GI:1857256; contains Pfam profiles PF03108: MuDR
           family transposase, PF04434: SWIM zinc finger
          Length = 785

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 102 LIIDKRRNTMEYCYKLWVGNGQDIVKKYFPLSF 200
           +++D +    +Y  KL + +  D   +YFPL+F
Sbjct: 382 IVVDTKNLGGKYKMKLMIASAFDATNQYFPLAF 414


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,051,197
Number of Sequences: 28952
Number of extensions: 233143
Number of successful extensions: 654
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 641
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)