Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0220
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    31   0.12 
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   3.5  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    26   6.1  
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei...    26   6.1  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   8.1  

>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 18/79 (22%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
 Frame = -2

Query: 357 TICKNDSDIIVLEFYKTGIPLRYFPGPV-RQNTE*SVMSCLVADKEPQNE-RIDGKLIFK 184
           T+CKN+++   L     G   ++F GP+ RQ  + + +  ++ DK+  N    D + + K
Sbjct: 441 TLCKNENNKTTLHGGNNGFDKQFFLGPIARQYEDYNTLEFILVDKDGNNGFPSDLETLVK 500

Query: 183 HSMKRKLVRLHNNNKKQKY 127
           +++K   + +   +   +Y
Sbjct: 501 YTIKNNSLEIEYKSVIPEY 519


>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = -2

Query: 420  PTLMAKVVN*FKKYINNCCYNTICKNDSDIIVLEFYKTGIPLRYF 286
            PT + K+   ++  I N    TICK D  I+   FY    P R F
Sbjct: 1743 PTALTKIFGFYRVDIRNPTTGTICKTDIMIMENVFYDE-CPSRIF 1786


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 515 SSFTVKHRSFCAFFSFSTVSAITLYKKTV 601
           S F++    FC  FSF TV ++    KT+
Sbjct: 46  SKFSMNSLKFCVLFSFKTVYSLLKLIKTL 74


>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
           Vps41|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 886

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +1

Query: 550 FFFFFHSKRNNVIQENCVLLTKGILKILYSVVSFNVNVKS 669
           FFF  H+    + Q+N +LL K IL    SVV  +V+++S
Sbjct: 54  FFFGSHNGAIYIYQKNGILLRKMILHSA-SVVDLSVDLES 92


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
 Frame = -2

Query: 354 ICKNDSDIIVLEFYKTGIPLRYFPGPVRQNTE*SVMSCLVADKEP----QNERIDGKLIF 187
           + +N  +++  +  ++ IP  Y P P   +      S L   ++P    +N++  G+ +F
Sbjct: 2   LAQNSREVLDKDL-ESHIPGAYSPAPPSSSLPTQNESNLQQSEKPLKHFENKKFKGEDVF 60

Query: 186 KHSMKRKLVRLHNNNKKQKYMH 121
            HS+ +     ++  K   Y H
Sbjct: 61  AHSISKPFDGQNDEEKPSLYSH 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,747,736
Number of Sequences: 5004
Number of extensions: 55673
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)