Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0219
(645 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0854 + 25400855-25403741,25406174-25407708 29 3.2
12_01_0494 + 3931664-3931830,3932034-3932151,3932661-3932896,393... 29 4.2
06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764 29 4.2
01_06_1406 - 37073548-37073822,37073892-37074111,37074200-370742... 29 4.2
01_06_0456 + 29521282-29522064 29 4.2
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384... 28 5.5
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 28 7.3
05_04_0284 - 19813179-19813340,19813464-19813748,19813850-198141... 27 9.7
03_06_0019 - 31078669-31080081 27 9.7
02_04_0220 - 21014225-21014386,21014492-21014572,21014739-210149... 27 9.7
01_06_1759 + 39689410-39689573,39689728-39689923,39690014-396901... 27 9.7
>06_03_0854 + 25400855-25403741,25406174-25407708
Length = 1473
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -2
Query: 128 AKRSPTYATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 3
AKR+PT T P AR +++ +F +P P P +V+S
Sbjct: 475 AKRAPTAVTVGAPPPQARTPAAAPAKAF-VSAPAPAPSSVIS 515
>12_01_0494 +
3931664-3931830,3932034-3932151,3932661-3932896,
3932992-3933225,3933659-3933797,3933878-3934096,
3934148-3934220,3934319-3934428
Length = 431
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = -1
Query: 546 WLPQASYPCGNFSAPLAKNSLY*RIDRPCFAVPMRTEHLDQASFCPFAPREVSVLAELAL 367
W P A N+ +P + N + RP PM +SF F+ + L +
Sbjct: 243 WAPMARSTSRNYYSPGSANLYFG--GRPLGVRPMEVVFDSGSSFTYFSAQPYQALVDAIK 300
Query: 366 GHLRYSLTDVPPQS 325
G L +L +VP S
Sbjct: 301 GDLSKNLKEVPDHS 314
>06_01_0328 + 2379610-2380359,2380479-2381108,2381222-2381764
Length = 640
Score = 28.7 bits (61), Expect = 4.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 250 TTLHAWNETPCARRYY 203
TT AW ETPCA R++
Sbjct: 560 TTTEAWVETPCAHRFH 575
>01_06_1406 -
37073548-37073822,37073892-37074111,37074200-37074246,
37074404-37074576,37075161-37075238,37075751-37075813,
37075889-37075961,37076150-37076189,37076302-37076368,
37076719-37078472,37079128-37079230,37080041-37080078,
37080221-37080347,37081944-37082152
Length = 1088
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +2
Query: 257 RKRSSPFKTPA*SGSRTLPGGEFDWGGTSV 346
+KR P K PA S S+ LPG + + G SV
Sbjct: 339 KKRGRPRKYPAPSNSKHLPGTDTELGNDSV 368
>01_06_0456 + 29521282-29522064
Length = 260
Score = 28.7 bits (61), Expect = 4.2
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Frame = -3
Query: 316 AWQC--PRTGSRGSFKRRRAFPPVTT 245
AW+C P +G+RG +RRR P TT
Sbjct: 12 AWRCYSPASGARGGSRRRRRRPAGTT 37
>03_02_0740 -
10836752-10837052,10837756-10837814,10837901-10838476,
10839965-10841686,10841776-10842173,10842264-10842318,
10842989-10843048,10843444-10843540,10844885-10844955,
10845029-10845109,10846054-10846124,10847951-10848119,
10848521-10848683,10848752-10848942,10849037-10849168
Length = 1381
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 336 PPQSNSPPGSVLEPDHAGVLNGDE 265
P +NS P +V +PD +LNGDE
Sbjct: 739 PTSNNSVPQNVDQPDSKKMLNGDE 762
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = -1
Query: 336 PPQSNSPPGSVLEPDHAGVLNG--DERFRPSPLCTLGTKHRAPADIIDRAP 190
PP+++S L+P G + +R +PS C G ++R A RAP
Sbjct: 50 PPRASSRAARALKPSGNGAASRRPSKRLKPSSSCCSGKENRPAAAGSGRAP 100
>05_04_0284 -
19813179-19813340,19813464-19813748,19813850-19814131,
19814224-19814531,19814654-19814927,19815807-19816175,
19816372-19816434,19817495-19817789,19817818-19818008,
19818123-19818428,19818516-19818638
Length = 885
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = -1
Query: 285 GVLNGDERFRPSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 148
G+L+G ++RP L H +PAD + A L P+ ++ V+
Sbjct: 825 GLLDGKLKWRPLVLPDRYIDHGSPADQLAEAGLTPSHIAATVFNVL 870
>03_06_0019 - 31078669-31080081
Length = 470
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 6/61 (9%)
Frame = -3
Query: 394 GFCPR*AGL-----RTPALFFDRCTAPVKLPAWQCPRTGSRGSFKRRRAFPPVTTLH-AW 233
GFCP A + R P L D +P W RG+F+ A PPV T +W
Sbjct: 143 GFCPSSAAMFVTRIRIPELVRDGVLDESGMPRW-------RGAFRLAPAMPPVDTAEFSW 195
Query: 232 N 230
N
Sbjct: 196 N 196
>02_04_0220 -
21014225-21014386,21014492-21014572,21014739-21014938,
21014999-21015157,21015248-21015377,21015520-21015673,
21015785-21015867,21015981-21016040,21016131-21016217
Length = 371
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = +3
Query: 300 RGHCQAGSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWL 425
+GH +T A KNNAG L+ Q Q+ Q GK L
Sbjct: 212 KGHLWRSQITAAKEDKKNNAGALQLLQL-QEEACRQSGKDGL 252
>01_06_1759 +
39689410-39689573,39689728-39689923,39690014-39690103,
39690221-39690277,39690391-39690460,39690747-39690811,
39691408-39691462,39691704-39691831,39691919-39691950,
39692205-39692274,39692723-39692824,39692921-39693010,
39693084-39693232,39693620-39693731,39695332-39695412,
39695481-39695705,39695815-39695937,39696021-39696137
Length = 641
Score = 27.5 bits (58), Expect = 9.7
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -1
Query: 372 ALGHLRYSLTDVPPQSNSPPGSVLEP 295
ALGH+ L + P ++ PP ++P
Sbjct: 494 ALGHIELDLPEAPEKAPKPPAQAVDP 519
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,407,831
Number of Sequences: 37544
Number of extensions: 454117
Number of successful extensions: 1505
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1504
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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