Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0219
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 31 0.65
At5g23630.1 68418.m02771 ATPase E1-E2 type family protein / halo... 29 2.0
At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase... 29 2.6
At1g70740.1 68414.m08154 protein kinase family protein contains ... 29 2.6
At4g20900.1 68417.m03030 male sterility MS5 / pollenless 3 nearl... 28 4.6
At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot... 28 6.1
At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesi... 28 6.1
At1g67340.1 68414.m07665 zinc finger (MYND type) family protein ... 28 6.1
At5g33320.1 68418.m03955 triose phosphate/phosphate translocator... 27 8.1
At5g05360.2 68418.m00577 expressed protein similar to unknown pr... 27 8.1
At5g05360.1 68418.m00578 expressed protein similar to unknown pr... 27 8.1
At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containi... 27 8.1
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 8.1
At3g47910.1 68416.m05224 expressed protein low similarity to non... 27 8.1
At1g45150.1 68414.m05176 expressed protein 27 8.1
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 31.1 bits (67), Expect = 0.65
Identities = 17/49 (34%), Positives = 27/49 (55%)
Frame = -1
Query: 237 LGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETISHLCYTSHV 91
LG +H PA +I+R P PP +S +++++F E +CY S V
Sbjct: 231 LGLEHVLPA-VIERIPPPPG-ISESPLRMLLFDSFFNEYKGVICYVSVV 277
>At5g23630.1 68418.m02771 ATPase E1-E2 type family protein /
haloacid dehalogenase-like hydrolase familiy protein
similar to SP|O14072 Cation-transporting ATPase 4 (EC
3.6.3.-) {Schizosaccharomyces pombe}; contains InterPro
accession IPR001757: ATPase, E1-E2 type; contains Pfam
profile PF00702: haloacid dehalogenase-like hydrolase
Length = 1179
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 474 IDRPCFAVPMRTEHLDQASFCPFAPREVSVLAELALGHLRYSLTD 340
+D CF + +DQA C P + S E+ H R +TD
Sbjct: 73 VDFKCFVQFSKVNSIDQADACKVTPAKFSGSKEVVPLHFRSQMTD 117
>At4g15560.1 68417.m02377 1-deoxy-D-xylulose 5-phosphate synthase,
putative / 1-deoxyxylulose-5-phosphate synthase,
putative / DXP-synthase, putative (DEF) (CLA1) identical
to SP|Q38854 Probable 1-deoxy-D-xylulose 5-phosphate
synthase, chloroplast precursor (EC 4.1.3.37)
(1-deoxyxylulose-5-phosphate synthase) (DXP synthase)
(DXPS). [Mouse-ear cress] {Arabidopsis thaliana}, DEF
(deficient in photosynthesis) protein [Arabidopsis
thaliana] GI:1399261
Length = 717
Score = 29.1 bits (62), Expect = 2.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -1
Query: 285 GVLNGDERFRPSPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVV 148
G+L+G ++RP L H APAD + A L P+ ++ + ++
Sbjct: 664 GLLDGKLKWRPMVLPDRYIDHGAPADQLAEAGLMPSHIAATALNLI 709
>At1g70740.1 68414.m08154 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 425
Score = 29.1 bits (62), Expect = 2.6
Identities = 26/79 (32%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Frame = -1
Query: 438 EHLDQASFCPFAPREVSVLAELAL------GHLRYSLTDVPPQSNSPPGSVLEPDHAGVL 277
E LDQ P +V + ++ L H R S+ V + PG + EPDH GV
Sbjct: 289 EILDQDIAASADPDQVKLCVQIGLLCVQGDPHQRPSMRRVSLLLSRKPGHLEEPDHPGVP 348
Query: 276 NGDER---FRPSPLCTLGT 229
R RPS +LGT
Sbjct: 349 GSRYRRRTQRPSGAASLGT 367
>At4g20900.1 68417.m03030 male sterility MS5 / pollenless 3 nearly
identical to male sterility MS5 [Arabidopsis thaliana]
GI:3859112, pollenless3 [Arabidopsis thaliana]
GI:4028970
Length = 450
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/49 (28%), Positives = 20/49 (40%)
Frame = -1
Query: 336 PPQSNSPPGSVLEPDHAGVLNGDERFRPSPLCTLGTKHRAPADIIDRAP 190
PP P DH + ER RP C+ ++ R P I+ + P
Sbjct: 10 PPGVYYTPPPARTSDHVAAMPMTERRRPPYSCSSSSERRDPFHIVHKVP 58
>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
similar to SP|P22418 Fructose-1,6-bisphosphatase,
chloroplast precursor (EC 3.1.3.11)
(D-fructose-1,6-bisphosphate 1-phosphohydrolase)
(FBPase) {Spinacia oleracea}; contains Pfam profile
PF00316: fructose-1,6-bisphosphatase
Length = 404
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 107 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVS 3
A+ + SP+N+ L S SS +D P PL +VS
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVS 139
>At4g05190.1 68417.m00781 kinesin-like protein A, putative kinesin
like protein A, Arabidopsis thaliana, gb:Q07970
Length = 790
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -1
Query: 201 DRAPLPPNRVSNETMKVVVFQRRSRET 121
+RAPLP V E + + F +R +ET
Sbjct: 7 NRAPLPSPNVKKEALSSIPFDKRRKET 33
>At1g67340.1 68414.m07665 zinc finger (MYND type) family protein /
F-box family protein
Length = 379
Score = 27.9 bits (59), Expect = 6.1
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1
Query: 252 SPLCTLGTKHRAPADIIDRAPLPPNRVSNETMKVVVFQRRSRETIS 115
S LC LG+ R PAD I+ L R+ M +V R S + I+
Sbjct: 54 SILCKLGSTSRCPADFIN-VLLTCKRLKGLAMNPIVLSRLSPKAIA 98
>At5g33320.1 68418.m03955 triose phosphate/phosphate translocator,
putative similar to SWISS-PROT:P52178 triose
phosphate/phosphate translocator [Cauliflower] {Brassica
oleracea}
Length = 408
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/43 (37%), Positives = 23/43 (53%)
Frame = -2
Query: 497 LKTLYTKGSIGRVSQSLCVLNIWIKPAFALLLHARFLSSLSWP 369
L L+T S+G+VS S ++P F++LL A FL P
Sbjct: 182 LGNLFTNMSLGKVSVSFTHTIKAMEPFFSVLLSAMFLGEKPTP 224
>At5g05360.2 68418.m00577 expressed protein similar to unknown
protein (pir||T02500)
Length = 153
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 192 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 82
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At5g05360.1 68418.m00578 expressed protein similar to unknown
protein (pir||T02500)
Length = 163
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 192 PLPPNRVSNETMKVVVFQRRSRETISHLCYTSHVSLQ 82
P P+R S V ++ +R+T SHL Y++ V L+
Sbjct: 20 PTRPHRPSPSPRNKVFVKKTTRDTTSHLDYSNLVKLE 56
>At4g39530.1 68417.m05589 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 834
Score = 27.5 bits (58), Expect = 8.1
Identities = 7/21 (33%), Positives = 15/21 (71%)
Frame = +1
Query: 574 SFDVGSSYHCEQIRQALDCSP 636
S +G +HC+ +++ L+C+P
Sbjct: 570 SVQLGQEFHCQLLKRGLECNP 590
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 119 SPTYATPLMSPYNARLESSSTGSSFPADSPK-PVPLA 12
SPT + + SP A ++ + +S P +SPK P P++
Sbjct: 41 SPTKSPAVTSPTTAPAKTPTASASSPVESPKSPAPVS 77
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 240 TLGTKHRAPADIIDRAPLPPNRVSNETMKVVV 145
T+G+ HR+ AD ++ +PLP V + + +V
Sbjct: 972 TIGSDHRSNADSVEHSPLPVAPVGDHSEADIV 1003
>At1g45150.1 68414.m05176 expressed protein
Length = 643
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = -3
Query: 313 WQCPRTGSRGSFKRRRAFPPVTTLHAWNETPCARRYYRPRTASAQPS 173
W P T + GS + RA P+ L A NE + RP+ + A S
Sbjct: 49 WCMPNTVNVGSQETPRALEPINLLAARNERESFQIAMRPKVSWAASS 95
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,999,299
Number of Sequences: 28952
Number of extensions: 333318
Number of successful extensions: 951
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 951
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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