Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0217
         (593 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...   100   1e-22
SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding...    26   4.8  
SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces pom...    26   4.8  
SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyce...    25   8.3  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score =  100 bits (240), Expect = 1e-22
 Identities = 45/89 (50%), Positives = 58/89 (65%)
 Frame = -2

Query: 274 IRILFYYLQAYEYIEASFTIADRIYGSTFFIATGFHGIHVIIGTLFLLICYIRHLNNHFS 95
           +  LF   QAYEY  A FTI+D +YG++F+ ATG HGIH+I+GT+ LL+        H +
Sbjct: 181 LSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLLVATYNIYTYHLT 240

Query: 94  KNHHFGFEAAA*Y*HFVDVV*LFLYISIY 8
             HH GFE    Y HF DVV LFLY++IY
Sbjct: 241 NTHHNGFECGIYYWHFCDVVWLFLYLTIY 269



 Score = 61.7 bits (143), Expect = 8e-11
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 2/69 (2%)
 Frame = -3

Query: 459 SPNIEIGRI*PPSRITP--FNPFQIPLLNTIILIRSGVTVT*AHHSLIENNFSQTKQRLF 286
           SP  E+G + PP  I     +P ++PLLNT+IL+ SG ++T AH+SLI  N     + L+
Sbjct: 117 SPTFELGAVWPPVGIADKTIDPLEVPLLNTVILLTSGASLTYAHYSLIARNRENALKGLY 176

Query: 285 LTILLGFYF 259
           +TI L F F
Sbjct: 177 MTIALSFLF 185


>SPCC1753.01c |ssb2|SPCC584.06c, rpa2|single-stranded DNA binding
           protein Ssb2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 279

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = -2

Query: 172 FHGIHVIIGTLFLLICYIRHLNNHFSKNHHFGFEAAA*Y*HF 47
           +  I +  G +++   YIR + +H   + HF  EA A + HF
Sbjct: 130 YGNIKIFSGKIYIASQYIRTIKDHNEVHFHF-LEAIAVHLHF 170


>SPAC227.01c ||SPAPB21F2.04c|Erd1 homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 373

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 530 NNFIYYFKIFFLLDFFELFSIEDYPQILKLEEYDPLQELHHLIHSKFP 387
           N+FI YF +   L F  +F +  +  IL L   + + ++  L+H+  P
Sbjct: 8   NHFINYFPLVLRLFFLVVFGLYSFTLILHLLVINRV-DVFSLLHTPLP 54


>SPAC30D11.11 |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 295 KIIFNYFIRILFYYLQAYE-YIEASFTI---ADRIYGSTFFIATGFH 167
           K IF+Y I +LFY L   E ++   F I   + +I+     +   FH
Sbjct: 377 KSIFSYIIGVLFYGLHIPERFLPGKFDIIGNSHQIWHIAIIVGVAFH 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,000,732
Number of Sequences: 5004
Number of extensions: 36208
Number of successful extensions: 95
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)