Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0217
         (593 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0327 + 27980841-27980972,27981673-27981763,27981848-279819...    29   2.1  
03_05_0495 - 24907659-24908747                                         27   8.5  

>02_05_0327 +
           27980841-27980972,27981673-27981763,27981848-27981900,
           27981990-27982154,27982544-27982662,27982880-27982997,
           27983096-27983173,27983326-27983424
          Length = 284

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -1

Query: 527 NFIYYFKIFFLLDFFELFSIEDYPQILKLEEYDPL 423
           NFIYY  +  L     LF +   P  L+L +Y PL
Sbjct: 247 NFIYYLIVEILPSSLVLFILRRIPSKLRLAQYHPL 281


>03_05_0495 - 24907659-24908747
          Length = 362

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = -2

Query: 202 YGSTFFIATGFHGIHVI----IGTLFLLICYIRHLNNHFSKNHHF 80
           +GS FF+ T  H I V+    +   F L C I+  ++ + + H+F
Sbjct: 238 FGSQFFVLTRKHAIMVVRDMKLWRKFKLPCLIKRRDSCYPEEHYF 282


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,218,967
Number of Sequences: 37544
Number of extensions: 179606
Number of successful extensions: 364
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)