Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0216
         (285 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    27   1.8  
08_01_0216 - 1717696-1718265,1718856-1720082,1720558-1720627,172...    26   5.4  

>07_03_0715 +
           20889399-20890111,20890950-20891060,20891128-20891338,
           20891414-20891474,20891719-20891956,20892046-20892196,
           20892415-20892703,20893464-20894207,20894720-20894851,
           20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 164 KFFVDFSYLLLDIFKT*IHCFGFSFFQTLSPRHLENISL*SFFLVFS-HCILF 9
           +FF D   LLLD+ K   H    +FF+     +   +S+  F LV S  C+LF
Sbjct: 824 QFFTDTKMLLLDVLKKSEHTGKKAFFRR---ENTALVSIGGFILVVSISCLLF 873


>08_01_0216 -
           1717696-1718265,1718856-1720082,1720558-1720627,
           1721579-1721602,1722073-1722140
          Length = 652

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 10/26 (38%), Positives = 19/26 (73%)
 Frame = +3

Query: 84  LKKTKAKAVNLGLKNIKQKVAEIDKE 161
           L   + +A+  G+ N+KQ+VA+++KE
Sbjct: 551 LASRENQALREGMDNMKQRVADLEKE 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,755,815
Number of Sequences: 37544
Number of extensions: 43304
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)