Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0216
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)              27   3.2  
SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.2  
SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4)             25   7.4  
SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.8  

>SB_8666| Best HMM Match : Flagellar_rod (HMM E-Value=2.5)
          Length = 895

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
 Frame = -2

Query: 218 FKICL--IFSITFRFLIYIYKFFVDFSYLLLDIFKT*IHCFGFSFFQTLSPRHLENISL* 45
           F  CL  ++S+  R L+ +Y   + F+  LLD++   +  F     Q +SP+   NI L 
Sbjct: 664 FTRCLLGVYSMFTRRLLGVY---LTFTRCLLDVYSKQLQSFSILGCQRVSPK---NIILA 717

Query: 44  SFFLVFSHCI 15
           S  LVF+ C+
Sbjct: 718 S--LVFTRCL 725


>SB_30760| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1868

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 164  KFFVDFSYLLLDIFKT*IHCFGFSFFQT 81
            K+F DFS+   D+FK+ +   GF  F T
Sbjct: 1110 KYFRDFSHFDNDLFKSDLGLIGFQQFVT 1137


>SB_55146| Best HMM Match : Synaptobrevin (HMM E-Value=1.4)
          Length = 810

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 143 YLLLDIFKT*IHCFGFSFFQTLSPRHLENI 54
           YLLLD++   +HC G  + + +S +H   I
Sbjct: 32  YLLLDVYSPSLHCAG-DWGELISEKHAGTI 60


>SB_41705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 337

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 84  LKKTKAKAVNLGLKNIKQ 137
           L KTKAKA +LG   I+Q
Sbjct: 320 LDKTKAKATSLGCSQIRQ 337


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,600,619
Number of Sequences: 59808
Number of extensions: 58492
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 303237528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)