Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0216
         (285 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical pr...    26   5.0  
AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine re...    26   5.0  
Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine re...    25   6.6  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    25   8.7  

>Z35663-2|CAA84735.2|  335|Caenorhabditis elegans Hypothetical
           protein T04A8.2 protein.
          Length = 335

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 218 FKICLIFSITFRFLIYIYKFFVDFSYLLLDI 126
           FK   I++ +  FLIY    FV FS + LDI
Sbjct: 55  FKNSEIYASSSFFLIYSTDCFVSFSMIFLDI 85


>Z82057-2|CAD89759.1|  561|Caenorhabditis elegans Hypothetical
           protein T26H8.4 protein.
          Length = 561

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -3

Query: 163 NSLSISATFCLIFLRPKFTALALVFFKLL 77
           NSLSIS+TF  IF+  +F+ ++  F  LL
Sbjct: 61  NSLSISSTFPFIFM-TEFSTISTSFLILL 88


>AF098997-9|AAC68720.1|  325|Caenorhabditis elegans Serpentine
           receptor, class i protein42 protein.
          Length = 325

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -2

Query: 203 IFSITFRFLIYIYKFFVDFSYLLLDIFKT 117
           I+ ITF ++I I+ F ++ + +LL I+K+
Sbjct: 7   IWYITFFYVIGIFSFVLNIAVILLVIYKS 35


>Z81513-5|CAB04175.1|  332|Caenorhabditis elegans Hypothetical
           protein F26D2.4 protein.
          Length = 332

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -2

Query: 158 FVDFSYLLLDIFKT*IHCFGFSFFQTLSPRHLENISL 48
           F  +S   L IF+  +H FG       +P H+E + L
Sbjct: 15  FYAYSLHFLSIFQIPLHIFGTYIVLFKTPIHMERVKL 51


>AC006655-1|AAF39875.1|  391|Caenorhabditis elegans Serpentine
           receptor, class w protein6 protein.
          Length = 391

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
 Frame = -2

Query: 191 TFRFLIYIYKFFVDFSYLLLDIFKT*IHCFGFSFFQTLSP--RHLENISL*SFFLV---F 27
           +F   + I  F  +F+Y L  +F      FGF  FQTL     HL +I+L   FL+   F
Sbjct: 277 SFVIAMAISTFASEFAYGL--VFTVEHFIFGFEMFQTLKTLFMHLNSITL--LFLMASSF 332

Query: 26  SH 21
           SH
Sbjct: 333 SH 334


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 200 FSITFRFLIYIYKFFVDFSYLLLDIFKT*IHCFGFSFFQT 81
           F IT    +YI+      +Y+L  IF    HC  FS   T
Sbjct: 253 FLITLLSTLYIFSMDNCPTYVLAGIFMYTCHCVSFSILCT 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,648,098
Number of Sequences: 27780
Number of extensions: 49088
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 270584450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)