Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0216
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52860.1 68418.m06561 ABC transporter family protein                27   1.5  
At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative (CH...    27   2.0  
At2g19210.1 68415.m02241 leucine-rich repeat protein kinase, put...    26   4.6  
At5g64020.1 68418.m08038 expressed protein strong similarity to ...    25   8.1  
At3g18800.1 68416.m02388 expressed protein                             25   8.1  

>At5g52860.1 68418.m06561 ABC transporter family protein 
          Length = 589

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 218 FKICLIFSITFRFLIYIYKFFVDFSYLLLDIFKT*IHCFGF-SFFQTLSPRHLENISL*S 42
           F I +I+S++  FLI +   +  F Y +L I+   +    F  F  +L+P ++   SL +
Sbjct: 418 FVISIIYSVSVYFLIGLCPTWQAFGYFVLVIWIILLMANSFVLFLSSLAPNYITGTSLVT 477

Query: 41  FFL 33
             L
Sbjct: 478 ILL 480


>At3g52080.1 68416.m05715 cation/hydrogen exchanger, putative
           (CHX28) monovalent cation:proton antiporter family 2
           (CPA2) member, PMID:11500563
          Length = 732

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 131 DIFKT*IHCFGFSFFQTLSP 72
           D+  T ++CFGF FF T  P
Sbjct: 185 DMISTLLYCFGFIFFPTEKP 204


>At2g19210.1 68415.m02241 leucine-rich repeat protein kinase,
          putative similar to light repressible receptor protein
          kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
          contains leucine rich repeat (LRR) domains,
          Pfam:PF00560; contains protein kinase domain,
          Pfam:PF00069
          Length = 881

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = -1

Query: 51 SLILFSCFFPLYFILIQ 1
          SLI+F+CFF ++ +L++
Sbjct: 8  SLIIFACFFAVFVLLVR 24


>At5g64020.1 68418.m08038 expressed protein strong similarity to
           unknown protein (pir||T02538)
          Length = 408

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -2

Query: 95  SFFQTLSPRHLEN 57
           +FF+T+SPRH +N
Sbjct: 293 AFFRTISPRHFKN 305


>At3g18800.1 68416.m02388 expressed protein
          Length = 197

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 200 FSITFRFLIYIYKFFVDFSYLLL 132
           +++ F FLI +Y F + FS ++L
Sbjct: 173 WALYFGFLILLYTFMISFSVVIL 195


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,092
Number of Sequences: 28952
Number of extensions: 41946
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 251821800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)