Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0215
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MB...    29   0.94 
SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   2.2  
SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|ch...    27   2.2  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    27   2.9  

>SPAC24H6.01c ||SPAPB21F2.01|membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 588

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 17/93 (18%)
 Frame = -3

Query: 525 AQLRFTSRHPVLQNIIIDYYNVIKPKYYTYYNIK----IEFR------LKKN*SK----- 391
           A  +F+S HP L    +D Y  I  ++Y  +NI     + F       LK N  K     
Sbjct: 213 AYCKFSSLHPGLG--FLDQYTGILERWYVLFNITMLRLVSFNMDYYWSLKHNSEKLNTLI 270

Query: 390 --KD*VPETLTNKNKLNFLYLKYDHNVKCVLEF 298
             KD  P TLT + ++++  L  D+N+K  L +
Sbjct: 271 FDKDREPTTLTFRERVDYSCLDEDYNLKNFLTY 303


>SPBC3H7.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 287

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -2

Query: 190 IQKIQRLLIVHLIKILYLNNYYHIQIIFKAMLHHS 86
           + K++   I+HL +IL L+NY H  +     L H+
Sbjct: 84  VLKLKDSAIIHLDQILNLSNYMHYALYCLPRLRHN 118


>SPCC320.08 |||membrane transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 505

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 390 FWINFFLNEILFLCCSMCN 446
           FWI FFL ++L LC +  N
Sbjct: 141 FWIVFFLGQVLSLCITATN 159


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -3

Query: 369 LTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 280
           +TNK   +FLYL+ D   KC + +   NFI
Sbjct: 619 VTNKGTYDFLYLRIDFVNKCNVGYAFINFI 648


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,755,372
Number of Sequences: 5004
Number of extensions: 53564
Number of successful extensions: 111
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)