Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0215
         (752 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_27219| Best HMM Match : Cad (HMM E-Value=4)                         30   2.3  
SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  

>SB_54883| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2070

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/50 (26%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -2

Query: 172 LLIVHLIKILYLNNYYHIQIIFKA-MLHHSVNYYVFFTVY*NIFIIGLNK 26
           +++ H+I + ++   YH+ +++   M++H V  Y+   VY  I I+ + K
Sbjct: 168 IMVYHVIMVYHVIMVYHVIMVYLVIMVYHVVMVYLVIMVYLVIIIVQVQK 217


>SB_27219| Best HMM Match : Cad (HMM E-Value=4)
          Length = 297

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY*NI 47
           + + + + Y +N YY + + +   +++SVN Y   TVY +I
Sbjct: 110 VYYSVNVYYSVNVYYSVNVYYSVNVYYSVNVYYSVTVYYSI 150



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY*NI 47
           + + I + Y +N YY + + +   +++SVN Y    VY +I
Sbjct: 68  VYYSINVYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSI 108



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY 56
           + + + + Y +N YY I + +   +++SVN Y    VY
Sbjct: 62  VYYSVNVYYSINVYYSINVYYSVNVYYSVNVYYSVNVY 99



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY 56
           + + I + Y +N YY + + +   +++SVN Y    VY
Sbjct: 74  VYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSINVY 111



 Score = 28.3 bits (60), Expect = 7.1
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY*NIFI 41
           + + I + Y +N YY + + +   +++SVN Y    VY ++ +
Sbjct: 104 VYYSINVYYSVNVYYSVNVYYSVNVYYSVNVYYSVNVYYSVTV 146



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -2

Query: 142 YLNNYYHIQIIFKAMLHHSVNYYVFFTVY*NI 47
           ++N YY I + +   +++S+N Y    VY +I
Sbjct: 11  FVNVYYSIDVYYSVNVYYSINVYYSVNVYYSI 42



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY 56
           + + + + Y +N YY I + +   +++SVN Y    VY
Sbjct: 92  VYYSVNVYYSVNVYYSINVYYSVNVYYSVNVYYSVNVY 129



 Score = 27.9 bits (59), Expect = 9.4
 Identities = 10/38 (26%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = -2

Query: 166 IVHLIKILY-LNNYYHIQIIFKAMLHHSVNYYVFFTVY 56
           + + + + Y +N YY + + +   +++SVN Y    VY
Sbjct: 98  VYYSVNVYYSINVYYSVNVYYSVNVYYSVNVYYSVNVY 135


>SB_40223| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 593

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +3

Query: 285 NSFSKILTHIL-HCDRTLSTKN*AYFCLLVFRGLSPFWINFFLNEILFL 428
           ++  K+LT +L H D  LSTK   Y  +++      F++N++L  +L L
Sbjct: 358 HALGKLLTKVLQHQDIRLSTKLKVYNAIVLPGIAISFYVNYYLFSVLLL 406


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,208,169
Number of Sequences: 59808
Number of extensions: 343880
Number of successful extensions: 610
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)