Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0215
         (752 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical pr...    29   3.5  
Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical pr...    28   8.2  
AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily a...    28   8.2  

>Z68302-5|CAA92633.2|  382|Caenorhabditis elegans Hypothetical
           protein ZK792.2 protein.
          Length = 382

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/69 (26%), Positives = 35/69 (50%)
 Frame = -2

Query: 253 QLKDCAKFCFEIYTAKYTS*MIQKIQRLLIVHLIKILYLNNYYHIQIIFKAMLHHSVNYY 74
           ++K+ A+F     T+ +T  +   I+  ++  +IKILYL N     +I    L    N +
Sbjct: 155 KIKEMARFMRTKITSVHTPSLFSFIRMYMVYSVIKILYLVNAIAQFVIIAIFLGQKRNLF 214

Query: 73  VFFTVY*NI 47
             +T++ N+
Sbjct: 215 WGWTLFMNL 223


>Z81565-5|CAB04583.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 136 NNYYHIQIIFKAMLHHSVNYYVFFTVY*NIFIIGLNK 26
           +N +++++IF   + H ++YY  +  Y   F I LN+
Sbjct: 85  HNEHNMEVIFPVKVFHFLHYYFAYAQYIYNFFISLNR 121


>Z70267-8|CAA94216.1|  332|Caenorhabditis elegans Hypothetical
           protein K04C1.6 protein.
          Length = 332

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 136 NNYYHIQIIFKAMLHHSVNYYVFFTVY*NIFIIGLNK 26
           +N +++++IF   + H ++YY  +  Y   F I LN+
Sbjct: 85  HNEHNMEVIFPVKVFHFLHYYFAYAQYIYNFFISLNR 121


>Z81477-5|CAB03926.1|  334|Caenorhabditis elegans Hypothetical
           protein C27C7.7 protein.
          Length = 334

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -3

Query: 354 KLNFLYLKYDHNVKCVLEFY 295
           K N  YL Y H +KC LE +
Sbjct: 209 KYNIQYLIYQHGIKCALELW 228


>AF026213-6|AAB71307.1|  655|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 123 protein.
          Length = 655

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 329 YFKYKKLSLFLFVSVSGT*SFLD*FFFKR 415
           YF Y  + +F+F  ++GT  FL  ++F R
Sbjct: 618 YFSYTSIFVFMFFLMTGTIGFLATYYFVR 646


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,025,160
Number of Sequences: 27780
Number of extensions: 292240
Number of successful extensions: 623
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)