Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0215
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    24   1.8  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    22   5.4  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    22   5.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    21   9.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    21   9.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    21   9.4  

>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 414 RLKKN*SKKD*VPETLTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 280
           R ++  S++  +  +L+NK   N    KY++N  C   +Y  N+I
Sbjct: 70  RTERERSREPKIISSLSNKTIHNNNNYKYNYNNNCKKLYYNINYI 114


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 157 LIKILYLNNYYHIQIIFK 104
           LIK L+ N + HIQ IFK
Sbjct: 47  LIKDLFDNVHNHIQNIFK 64


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 157 LIKILYLNNYYHIQIIFK 104
           LIK L+ N + HIQ IFK
Sbjct: 30  LIKDLFDNVHNHIQNIFK 47


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 414 RLKKN*SKKD*VPETLTNKNKLNFLYLKYDHNVKCVLEFY*KNFIINAQ 268
           R ++  SK+  +  +L+N    N+ Y  Y++      + Y KN+IIN +
Sbjct: 70  RKERERSKEPKIISSLSN----NYKYSNYNNYNNYNKKLYYKNYIINIE 114


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 375 ETLTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 280
           +T+ N N   + Y   ++N  C   +Y  N+I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 375 ETLTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 280
           +T+ N N   + Y   ++N  C   +Y  N+I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 375 ETLTNKNKLNFLYLKYDHNVKCVLEFY*KNFI 280
           +T+ N N   + Y   ++N  C   +Y  N+I
Sbjct: 88  KTIHNNNNYKYNYNNNNYNNNCKKLYYNINYI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,485
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)