Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0215
         (752 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    29   2.5  
At3g60160.1 68416.m06717 ABC transporter family protein similar ...    28   5.8  

>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/43 (32%), Positives = 26/43 (60%)
 Frame = +3

Query: 144 NILIKCTISNLWIFCII*LVYFAV*ISKQNLAQSFNWTCISIV 272
           NIL   T   LW F    +++FA+ +S  +LA + +W C++++
Sbjct: 158 NILETGTRLRLWSFHSPDMLFFALVLSDPDLAPTKDWECLNLL 200


>At3g60160.1 68416.m06717 ABC transporter family protein similar to
           ATP-binding cassette transporter MRP8 GI:18031899 from
           [Arabidopsis thaliana]
          Length = 1490

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 10/54 (18%)
 Frame = +3

Query: 141 YNILIKCTISNLWIFCII*LVYF----------AV*ISKQNLAQSFNWTCISIV 272
           YNI + C++S L   C I L+ F          +V +    ++QSF+W  +S+V
Sbjct: 82  YNISLLCSVSILGTHCFILLLLFRDSVVSRCDSSVSVFSAEVSQSFSWLFVSVV 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,340,498
Number of Sequences: 28952
Number of extensions: 241098
Number of successful extensions: 458
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 444
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)