Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0213
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical...    28   3.4  
AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical...    27   5.9  
Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical pr...    27   7.8  
U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical pr...    27   7.8  
AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical ...    27   7.8  
AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.      27   7.8  

>AF040661-10|AAG24215.1|  426|Caenorhabditis elegans Hypothetical
           protein W10G11.6 protein.
          Length = 426

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRE 185
           RPSG WC     GI     +AE + A  G  +  ++ R+
Sbjct: 93  RPSGGWCMRVFTGIHDAKIEAERACAAKGGTLTGLQNRD 131



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = -1

Query: 340 REEPQFRTFGSCTRPSGRWCEATIRGIMPNASKAEASLA 224
           R EP +R F    RPSG WC     G   +A+KA+A  A
Sbjct: 255 RCEPGWRFFN---RPSGGWCIRVFTGF--HAAKADAEAA 288


>AF040661-11|AAG24210.1|  211|Caenorhabditis elegans Hypothetical
           protein W10G11.15 protein.
          Length = 211

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 14/55 (25%), Positives = 22/55 (40%)
 Frame = -1

Query: 301 RPSGRWCEATIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHS 137
           RPSG WC     G     + AE S    G  +  ++ R      Q    ++++ S
Sbjct: 49  RPSGGWCMRVFEGFNAAKTDAEKSCKSVGSTLSGIQNRNEALYIQTALLAQIARS 103


>Z78416-1|CAB01682.1|  425|Caenorhabditis elegans Hypothetical
           protein C23H4.1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 174 EPPDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 353
           + P     T+S    D  RLA++ E  G  PR  +S    L       V   G+     Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322

Query: 354 YYRNDK 371
           YY+N++
Sbjct: 323 YYKNNR 328


>U97002-9|AAB52261.2|  985|Caenorhabditis elegans Hypothetical
           protein K09H11.1 protein.
          Length = 985

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 37  YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 144
           YIRT     +VLRKKP  S+       D   +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299


>AL132847-1|CAB63371.1|  375|Caenorhabditis elegans Hypothetical
           protein Y48G10A.2 protein.
          Length = 375

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 10/51 (19%), Positives = 28/51 (54%)
 Frame = -1

Query: 274 TIRGIMPNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETR 122
           +++G + + +    ++    K ++  EP+E+   +  D+ + ++HSK E +
Sbjct: 306 SLKGQIKSENYTSIAVTRLYKMLIRTEPKETALRRAADYLNELTHSKTEKK 356


>AF293976-1|AAG17881.1|  425|Caenorhabditis elegans CAB-1 protein.
          Length = 425

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 19/66 (28%), Positives = 28/66 (42%)
 Frame = +3

Query: 174 EPPDSRGSTVSISLPDSARLASALEAFGIIPRMVASHHRPLGRVHEPNVRNCGSSRTEQY 353
           + P     T+S    D  RLA++ E  G  PR  +S    L       V   G+     Y
Sbjct: 263 QEPQPAKQTISSQTVDKRRLATSAEYSGSAPRYSSSSLLLLAVGTVMCVGLIGTVAGGTY 322

Query: 354 YYRNDK 371
           YY+N++
Sbjct: 323 YYKNNR 328


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,846,906
Number of Sequences: 27780
Number of extensions: 236594
Number of successful extensions: 737
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)