Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0212
(434 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 29 0.31
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 27 1.2
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 27 1.6
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce... 26 2.2
SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15 |Schizo... 26 2.9
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom... 25 3.8
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 5.0
SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7 |Schizos... 25 5.0
SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase |Schiz... 25 6.7
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 24 8.8
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote... 24 8.8
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 24 8.8
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 24 8.8
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 24 8.8
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 29.1 bits (62), Expect = 0.31
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 331 SGCGRCRVWSMFVRYVRFSE 390
+GCG+ VW +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127
>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 1.2
Identities = 16/43 (37%), Positives = 25/43 (58%)
Frame = -2
Query: 202 ADMGTNRRDISTYIPHLNFQGPQRVSGHRRKCGALRVPNHISL 74
A GT++ +IST +P P++VSGH A R+P+ S+
Sbjct: 371 ATNGTSQSNISTPLPEPTPGQPRKVSGHNPP-SARRLPSASSV 412
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 26.6 bits (56), Expect = 1.6
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 295 PILIPKLRIQFADFLTYIILSTRGSSPWRPAA 200
P ++PKL+ + D + +I S + P +P+A
Sbjct: 100 PSVVPKLKALYQDNYSLVIFSNQNGIPRKPSA 131
>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 351
Score = 26.2 bits (55), Expect = 2.2
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -1
Query: 302 LRANPYSEVTDPICRLPYLHYSID*RLFTLETCCGYGYEPARHL 171
L + + P P+ S+D R+F LE+ GY EP L
Sbjct: 144 LNSKTSESLKSPTLSYPFDLDSLDKRIFKLESKIGYADEPLSEL 187
>SPAC823.03 |ppk15||serine/threonine protein kinase Ppk15
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 2.9
Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = -2
Query: 289 LIPKLRIQFADFLTYIILSTRGSSPWRPAADMGT---NRRDISTYIPHLNFQGPQRVSGH 119
L+ + RI D IL SSP D G+ R+ + TYI ++ P+ + G
Sbjct: 247 LLKQARIIHCDLKPENILLQDLSSPIVKVIDFGSACHERQTVYTYIQSRFYRSPEVILGL 306
Query: 118 RRKCG 104
CG
Sbjct: 307 HYNCG 311
>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 233
Score = 25.4 bits (53), Expect = 3.8
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = -1
Query: 368 TNIDQTRHRPHPLPVQTRHAPV 303
+N+D + PHP P Q PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121
>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1778
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/29 (34%), Positives = 18/29 (62%)
Frame = +3
Query: 207 GLQGEEPLVDRIM*VRKSANWIRNFGIRI 293
G +G+E V I + K+ W+R FG+++
Sbjct: 1413 GTKGDEDYVQSIP-ITKNMTWLRAFGLKL 1440
>SPAC13G6.03 |gpi7||GPI anchor biosynthesis protein Gpi7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 758
Score = 25.0 bits (52), Expect = 5.0
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +1
Query: 19 SGKSFLFCLSVXVPWNPXXGRYGSERE 99
+G LFCLS+ WN +Y R+
Sbjct: 478 AGSLQLFCLSIIKRWNQTGQKYSDLRD 504
>SPCC794.10 |||UTP-glucose-1-phosphate uridylyltransferase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 499
Score = 24.6 bits (51), Expect = 6.7
Identities = 8/22 (36%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = -1
Query: 308 PVLR-ANPYSEVTDPICRLPYL 246
PV+R +N + ++ + CR+PY+
Sbjct: 419 PVVRMSNEFKDIAELFCRIPYM 440
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 24.2 bits (50), Expect = 8.8
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 364 TSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQ 266
TS + P+ PD R +P + P LR+Q
Sbjct: 248 TSISASSNAFYKPAAPDNERPLDPHITPYLRLQ 280
>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 678
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -2
Query: 139 PQRVSGHRRKCGALRVPNHISLX*DSMELERS 44
P VSGH LR+ IS SM +ERS
Sbjct: 617 PLPVSGHTNNAHPLRLSTEISASQLSMIIERS 648
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = -3
Query: 276 YGSNLPTSLPTLFYRLEALHLGDLLR 199
YGS SLP LFY E L LG +L+
Sbjct: 271 YGSASHKSLPNLFYNPEKL-LGYILQ 295
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 24.2 bits (50), Expect = 8.8
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +2
Query: 32 FFSA*AFXFHGILXKGDMVRNAKSTAFAAVSGYSLRTLKIQVRDVRGDVA 181
FF+ HG+L + ++ ++ A G LR L+ R +G A
Sbjct: 550 FFAYIVHLLHGVLNRNNVKLIYETAALTGAKGLQLRALRRIARIEQGGTA 599
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 24.2 bits (50), Expect = 8.8
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -1
Query: 326 VQTRHAPVLRANPYSEVTDPI 264
+++ H +L +PY +V DPI
Sbjct: 287 LKSYHLSILEVDPYFQVNDPI 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,774,685
Number of Sequences: 5004
Number of extensions: 35164
Number of successful extensions: 104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -