Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0212
(434 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 31 0.41
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 1.6
04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414 29 1.6
04_03_0732 + 19095320-19095827,19095848-19096621,19096863-190969... 29 2.2
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994... 28 3.8
05_04_0162 + 18645459-18645827,18645934-18646149,18646224-186462... 28 3.8
01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853 28 3.8
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 27 6.6
11_08_0081 - 28216179-28216381,28216590-28216657,28217131-282172... 27 6.6
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 27 6.6
06_01_0350 + 2534422-2535615 27 6.6
01_01_0012 + 71903-72935,73468-73981,74619-76008 27 6.6
05_01_0162 - 1095020-1095202,1096114-1096188,1096939-1097039,109... 27 8.7
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 27 8.7
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 31.1 bits (67), Expect = 0.41
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
Frame = -1
Query: 368 TNIDQTRH------RPHPLPVQTRHAPVLRANP 288
T IDQ H + H +PVQ H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = -1
Query: 338 HPLPVQTRHAPVLRANPYSEVTDPICRLPYLHYSI 234
H L + RH P L+A P S + C+LP + +I
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPLISSAI 141
>04_04_0647 - 26928244-26928535,26931321-26931454,26932278-26933414
Length = 520
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/49 (32%), Positives = 24/49 (48%)
Frame = -2
Query: 268 QFADFLTYIILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSG 122
QF + + +L+ RG P +PAA RRD ++P + Q P G
Sbjct: 21 QFHLKVLHAVLAVRGPRPLQPAASASFRRRDRWFHLPLHDPQPPPAAEG 69
>04_03_0732 +
19095320-19095827,19095848-19096621,19096863-19096906,
19097191-19097250
Length = 461
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -1
Query: 344 RPHPLPVQTRHAPVLRANPYSEVTDP 267
RP+PL V +RHA VL + V DP
Sbjct: 133 RPNPLDVVSRHAGVLSRGDHCLVVDP 158
>12_02_0854 +
23697826-23698033,23699111-23699276,23699430-23699466,
23699531-23700145
Length = 341
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/25 (60%), Positives = 16/25 (64%)
Frame = -2
Query: 370 ARTSTRPGTGRIRFPSKPDTPRSSE 296
A TST PG GR R PS P TP S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39
>05_04_0162 +
18645459-18645827,18645934-18646149,18646224-18646278,
18646545-18646672,18647134-18647217,18648742-18648867,
18648949-18649086
Length = 371
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = -2
Query: 358 TRPGTGRIRFPSKPDTPRSSEPILIPKLR 272
TRP TG+ P K D RS + I KLR
Sbjct: 108 TRPRTGKAALPLKRDRTRSKRFLEIQKLR 136
>01_04_0113 - 16133794-16134933,16135030-16135611,16135698-16135853
Length = 625
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = -1
Query: 200 GYGYEPARHLHVHPSPEFSRSAES-IRTPPQMRCSSRSEPYLPXI 69
G+ P+ H P P+ S R PP R S RSE P +
Sbjct: 26 GFDVTPSPHAEPSPRPQLRHDNPSRSRVPPLERVSRRSEVVFPPL 70
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 259 DFLTYIILSTRGSSPWRPAADMGTNR---RDISTYIPHLNFQGPQRVSGH 119
DF+ +ILS R P P D R R ++ ++ HL +G Q V H
Sbjct: 841 DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVH 890
>11_08_0081 -
28216179-28216381,28216590-28216657,28217131-28217298,
28217370-28217436,28217509-28217576,28218256-28218420,
28218490-28218556,28218629-28218696,28219855-28219992,
28220189-28220353,28221227-28221304,28221380-28221532,
28222753-28222823,28223077-28223203,28223306-28223565,
28223679-28223842,28224287-28224450,28225873-28226159
Length = 826
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -1
Query: 386 LKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPY 285
+K + N+D RP P PV LRA PY
Sbjct: 1 MKPSPAANLDVRVERPRPPPVHPHRPGSLRARPY 34
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 27.1 bits (57), Expect = 6.6
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 259 DFLTYIILSTRGSSPWRPAADMGTNR---RDISTYIPHLNFQGPQRVSGH 119
DF+ +ILS R P P D R R ++ ++ HL +G Q V H
Sbjct: 841 DFIKGLILSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVH 890
>06_01_0350 + 2534422-2535615
Length = 397
Score = 27.1 bits (57), Expect = 6.6
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -3
Query: 63 PWNXNAQAEKKTLPGPLSGVF 1
PW +A+ E+K LP PL +F
Sbjct: 42 PWRSSARLERKLLPPPLPWLF 62
>01_01_0012 + 71903-72935,73468-73981,74619-76008
Length = 978
Score = 27.1 bits (57), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 161 PSPEFSRSAESIRTPPQMRCSSRSEPYLPXI 69
PSP RS R+P + R S RS Y P +
Sbjct: 518 PSPSARRSKSRSRSPIKYRRSRRSRSYSPPV 548
>05_01_0162 -
1095020-1095202,1096114-1096188,1096939-1097039,
1097467-1097577,1097704-1097807,1098260-1098493,
1098583-1099304
Length = 509
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = -1
Query: 344 RPHPLPVQTRHAPVLRANPY 285
RPH P+ T H P+ A P+
Sbjct: 398 RPHRFPLLTEHPPIWTAQPH 417
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 26.6 bits (56), Expect = 8.7
Identities = 19/55 (34%), Positives = 26/55 (47%)
Frame = +3
Query: 186 FVPISAAGLQGEEPLVDRIM*VRKSANWIRNFGIRIGSEDRGVSGLDGKRMRPVP 350
+V I+AA +E + I KS N + + I +ED GVSGL P P
Sbjct: 151 WVVITAASTMKDEAIFSEIQTKLKSNNVMLDVLTTITTEDLGVSGLKQIVSLPFP 205
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,432,596
Number of Sequences: 37544
Number of extensions: 267160
Number of successful extensions: 1022
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1001
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -