Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0212
(434 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z97055-2|CAI20388.1| 1501|Homo sapiens protein ( Human DNA seque... 30 3.0
Z82201-1|CAI20274.1| 1501|Homo sapiens protein ( Human DNA seque... 30 3.0
AL118498-1|CAI19709.1| 1501|Homo sapiens protein ( Human DNA seq... 30 3.0
AL031843-1|CAI19936.1| 1501|Homo sapiens protein ( Human DNA seq... 30 3.0
AL023801-1|CAI22791.1| 1501|Homo sapiens protein ( Human DNA seq... 30 3.0
BC057786-1|AAH57786.1| 512|Homo sapiens podocan-like 1 protein. 29 5.2
U12259-1|AAA80574.1| 283|Homo sapiens paired box homeotic prote... 29 9.1
U02368-1|AAC50053.1| 836|Homo sapiens PAX3 protein-forkhead tra... 29 9.1
U02309-1|AAA03628.1| 332|Homo sapiens PAX-3 protein. 29 9.1
U02308-1|AAA03627.1| 689|Homo sapiens protein ( Human PAX-3-FKH... 29 9.1
BC114363-1|AAI14364.1| 483|Homo sapiens paired box 3 protein. 29 9.1
BC101302-1|AAI01303.1| 483|Homo sapiens paired box 3 protein. 29 9.1
BC101301-1|AAI01302.1| 484|Homo sapiens paired box 3 protein. 29 9.1
BC101300-1|AAI01301.1| 483|Homo sapiens paired box 3 protein. 29 9.1
BC101299-1|AAI01300.1| 483|Homo sapiens paired box 3 protein. 29 9.1
AY251280-1|AAP13873.1| 407|Homo sapiens paired box 3 splice var... 29 9.1
AY251279-1|AAP13872.1| 403|Homo sapiens paired box 3 splice var... 29 9.1
>Z97055-2|CAI20388.1| 1501|Homo sapiens protein ( Human DNA sequence
from clone RP3-388M5 on chromosome 22. ).
Length = 1501
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 346 TGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPW 212
TG+ SK + R L+P R QF D L I LST G+ P+
Sbjct: 84 TGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPY 128
>Z82201-1|CAI20274.1| 1501|Homo sapiens protein ( Human DNA sequence
from clone RP3-345P10 on chromosome 22. ).
Length = 1501
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 346 TGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPW 212
TG+ SK + R L+P R QF D L I LST G+ P+
Sbjct: 84 TGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPY 128
>AL118498-1|CAI19709.1| 1501|Homo sapiens protein ( Human DNA
sequence from clone RP1-185D5 on chromosome 22. ).
Length = 1501
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 346 TGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPW 212
TG+ SK + R L+P R QF D L I LST G+ P+
Sbjct: 84 TGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPY 128
>AL031843-1|CAI19936.1| 1501|Homo sapiens protein ( Human DNA
sequence from clone RP1-246D7 on chromosome
22q13.1-13.33.ontains GSSs. ).
Length = 1501
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 346 TGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPW 212
TG+ SK + R L+P R QF D L I LST G+ P+
Sbjct: 84 TGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPY 128
>AL023801-1|CAI22791.1| 1501|Homo sapiens protein ( Human DNA
sequence from clone RP4-786D3 on chromosome 22q13.31-33.
).
Length = 1501
Score = 30.3 bits (65), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = -2
Query: 346 TGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPW 212
TG+ SK + R L+P R QF D L I LST G+ P+
Sbjct: 84 TGQNLTVSKSELRRIITDFLMPLTREQFQDVLAQIPLSTSGTVPY 128
>BC057786-1|AAH57786.1| 512|Homo sapiens podocan-like 1 protein.
Length = 512
Score = 29.5 bits (63), Expect = 5.2
Identities = 23/66 (34%), Positives = 32/66 (48%)
Frame = -3
Query: 291 SLFRSYGSNLPTSLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLT*IFKVRREYPDTAA 112
SL + S LP SLP LE LHL + L V GA S +T L ++ + D+
Sbjct: 201 SLSNNQLSYLPPSLPP---SLERLHLQNNLISKVPRGALSRQTQLRELYLQHNQLTDSGL 257
Query: 111 NAVLFA 94
+A F+
Sbjct: 258 DATTFS 263
>U12259-1|AAA80574.1| 283|Homo sapiens paired box homeotic protein
protein.
Length = 283
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 131 TVHRPQPLPPSTVHQSTIPSNPDS 154
>U02368-1|AAC50053.1| 836|Homo sapiens PAX3 protein-forkhead
transcription factor fusion protein.
Length = 836
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNPDS 350
>U02309-1|AAA03628.1| 332|Homo sapiens PAX-3 protein.
Length = 332
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 180 TVHRPQPLPPSTVHQSTIPSNPDS 203
>U02308-1|AAA03627.1| 689|Homo sapiens protein ( Human PAX-3-FKHR
gene fusion mRNA, partial cds. ).
Length = 689
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 180 TVHRPQPLPPSTVHQSTIPSNPDS 203
>BC114363-1|AAI14364.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNPDS 349
>BC101302-1|AAI01303.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNPDS 349
>BC101301-1|AAI01302.1| 484|Homo sapiens paired box 3 protein.
Length = 484
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNPDS 350
>BC101300-1|AAI01301.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNPDS 349
>BC101299-1|AAI01300.1| 483|Homo sapiens paired box 3 protein.
Length = 483
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 326 TVHRPQPLPPSTVHQSTIPSNPDS 349
>AY251280-1|AAP13873.1| 407|Homo sapiens paired box 3 splice
variant PAX3H protein.
Length = 407
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNPDS 350
>AY251279-1|AAP13872.1| 403|Homo sapiens paired box 3 splice
variant PAX3G protein.
Length = 403
Score = 28.7 bits (61), Expect = 9.1
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -1
Query: 353 TRHRPHPLPVQTRHAPVLRANPYS 282
T HRP PLP T H + +NP S
Sbjct: 327 TVHRPQPLPPSTVHQSTIPSNPDS 350
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,776,407
Number of Sequences: 237096
Number of extensions: 1367471
Number of successful extensions: 3989
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3989
length of database: 76,859,062
effective HSP length: 83
effective length of database: 57,180,094
effective search space used: 3487985734
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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