Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0212
(434 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 29 1.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 29 1.9
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 29 1.9
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 29 1.9
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 29 1.9
U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical pr... 27 5.9
AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical ... 27 5.9
Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical pr... 27 7.8
Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical pr... 27 7.8
U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical pr... 27 7.8
AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear recep... 27 7.8
AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear horm... 27 7.8
AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear horm... 27 7.8
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 29.5 bits (63), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = -1
Query: 377 T*RTNIDQTRHRPHPLPVQ---TRHAPVLRANPYSEVTDPI 264
T +++ID T H PHP+ VQ T+ V+ P V+ P+
Sbjct: 904 TLKSSIDITNHLPHPIAVQTEGTKGGEVMSVEPNGVVSVPL 944
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 394 LTR*NEHNARTSTRPGTGRIRFPSKPDT 311
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 394 LTR*NEHNARTSTRPGTGRIRFPSKPDT 311
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 394 LTR*NEHNARTSTRPGTGRIRFPSKPDT 311
LT NE+ TS++PG R+ P+K DT
Sbjct: 557 LTVNNENRGETSSQPGRDRLAPPNKTDT 584
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.7 bits (61), Expect = 1.9
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -2
Query: 394 LTR*NEHNARTSTRPGTGRIRFPSKPDT 311
LT NE+ TS++PG R+ P+K DT
Sbjct: 526 LTVNNENRGETSSQPGRDRLAPPNKTDT 553
>U64833-8|AAB04820.1| 432|Caenorhabditis elegans Hypothetical
protein B0507.3 protein.
Length = 432
Score = 27.1 bits (57), Expect = 5.9
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = -2
Query: 352 PGTGRIRFPSKPDTPRSSEPILIPKLRI 269
P ++ SKP TP + P+L+P++ +
Sbjct: 324 PNPAMVQKSSKPSTPIPAPPVLVPQVEL 351
>AF125451-4|AAD12823.1| 157|Caenorhabditis elegans Hypothetical
protein Y37E11B.3 protein.
Length = 157
Score = 27.1 bits (57), Expect = 5.9
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -2
Query: 319 PDTPRSSEPILIPKLRIQFADFLTYIIL-STRGSSPWRPAA 200
PDTP +S+P+L K D L I S R SSP R AA
Sbjct: 8 PDTPTTSQPLLSNKQTSFVVDDLEERIRESARISSPKRAAA 48
>Z70781-7|CAJ55254.1| 380|Caenorhabditis elegans Hypothetical
protein F57A8.2b protein.
Length = 380
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 337 IRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILS 233
++F D + E + P L I FLTYI++S
Sbjct: 156 LKFAGSADPAPAREDVNAPDLYIPLMSFLTYILVS 190
>Z70781-6|CAA94831.2| 349|Caenorhabditis elegans Hypothetical
protein F57A8.2a protein.
Length = 349
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 337 IRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILS 233
++F D + E + P L I FLTYI++S
Sbjct: 156 LKFAGSADPAPAREDVNAPDLYIPLMSFLTYILVS 190
>U41019-1|AAM51510.1| 542|Caenorhabditis elegans Hypothetical
protein C04E7.4 protein.
Length = 542
Score = 26.6 bits (56), Expect = 7.8
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 128 IRTPPQMRCSSRSEPYLPXIGFHGT 54
I T Q + SS +P+LP +GF GT
Sbjct: 299 IVTISQGKASSLYDPHLPTVGFDGT 323
>AF083226-1|AAD03684.1| 560|Caenorhabditis elegans nuclear receptor
NHR-8 protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 124 RILSADLENSGEGCTWRCRAGSYPYPQQVS 213
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-12|AAP31437.1| 559|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform b protein.
Length = 559
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 124 RILSADLENSGEGCTWRCRAGSYPYPQQVS 213
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
>AF036702-11|AAP31436.1| 560|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 8, isoform a protein.
Length = 560
Score = 26.6 bits (56), Expect = 7.8
Identities = 9/30 (30%), Positives = 19/30 (63%)
Frame = +1
Query: 124 RILSADLENSGEGCTWRCRAGSYPYPQQVS 213
++++ E S + CT +C+ G YP Q+++
Sbjct: 149 KLINKANEKSKDRCTCKCQCGFYPITQRLT 178
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,953,915
Number of Sequences: 27780
Number of extensions: 203182
Number of successful extensions: 613
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 613
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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