Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0212
         (434 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 330 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 428
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 330 KRMRPVPGLVDVRALCSF*RVSILI*CGLKNCI 428
           K +RPV    DV  +C   ++S LI   LKN I
Sbjct: 42  KLVRPVVNTSDVLRVCIKLKLSQLIDVNLKNQI 74


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -1

Query: 341 PHPLPVQTRHAPVLRANPYSEV 276
           P PLP     A + + +PYS +
Sbjct: 652 PFPLPPNLASANISQLDPYSSL 673


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2

Query: 119 VSGYSLRTLKIQVRDVR 169
           V+  ++  LKIQ+RDV+
Sbjct: 14  VNAMTIEELKIQLRDVQ 30


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -2

Query: 370  ARTSTRPGTGRIRFPSKPDTPRSS 299
            A T+ RPGT   +   KP  P +S
Sbjct: 1111 AATNIRPGTADNKPQLKPQKPFTS 1134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,232
Number of Sequences: 438
Number of extensions: 2631
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)