Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0212
         (434 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61550.1 68418.m07724 protein kinase family protein contains ...    29   1.0  
At1g76965.1 68414.m08961 glycine-rich protein                          29   1.0  
At2g19150.1 68415.m02235 pectinesterase family protein contains ...    29   1.8  
At1g07220.1 68414.m00768 expressed protein                             28   2.4  
At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical...    27   4.1  
At5g37380.2 68418.m04492 DNAJ heat shock N-terminal domain-conta...    27   5.5  
At5g37380.1 68418.m04491 DNAJ heat shock N-terminal domain-conta...    27   5.5  
At5g22390.1 68418.m02612 expressed protein                             27   5.5  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    27   7.2  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    27   7.2  
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica...    27   7.2  

>At5g61550.1 68418.m07724 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain;
           protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
          Length = 845

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 373 NARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYIILSTRGSSPWRPAA-- 200
           + R S    +G IRF     T  S++    P+L  ++ DFL+ +  +    SP+ PA   
Sbjct: 178 SVRPSESDASGSIRFERSSSTSGSTDS---PRLPPEYQDFLSAVSEAQSRVSPFSPALKH 234

Query: 199 DMGTN 185
            MG+N
Sbjct: 235 SMGSN 239


>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 352 PGTGRIRFPSKPDTPRSSEPILIPKLRIQFAD 257
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g19150.1 68415.m02235 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 339

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +1

Query: 109 ICGGVRILSADLENSGEGCTWRCRAGSYPYPQQV 210
           I GG+  +    ++  EGCT + R G YP P +V
Sbjct: 185 ISGGIDFIFGGAQSIFEGCTLKLRVGIYP-PNEV 217


>At1g07220.1 68414.m00768 expressed protein
          Length = 507

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 248 LHYSID*RLFTLETCCGYGYEPARHLHVHPSPEFSRSAESIRTPPQMRCSSRSEPY 81
           L Y +D  +   +T  G+  EP    H+ P   FS + +  +    ++CS  S PY
Sbjct: 37  LFYKVDDFIAQTKTLAGHNLEPTPW-HIFPRKSFSAATKHSQAYRILQCSYFSCPY 91


>At1g10930.1 68414.m01255 DNA helicase (RECQl4A) nearly identical to
           DNA Helicase [Arabidopsis thaliana] GI:11121449
          Length = 1188

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = -1

Query: 176 HLHVHPSPEFSRSAESIRTPPQMRCSSRSE 87
           H H   +P+ S S  S+RTPP  R +SR E
Sbjct: 229 HYHSTSTPQPSVSNFSLRTPPVDRSASRLE 258


>At5g37380.2 68418.m04492 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 392 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 267
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g37380.1 68418.m04491 DNAJ heat shock N-terminal
           domain-containing protein similar to SP|Q9QYI4 DnaJ
           homolog subfamily B member 12 {Mus musculus}; contains
           Pfam profile PF00226: DnaJ domain
          Length = 431

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 392 NSLKRT*RTNIDQTRHRPHPLPVQTRHAPVLRANPYSEVTDP 267
           N  K T  TN   T  R +P P Q  + P  + NP ++ T+P
Sbjct: 150 NFAKTTFTTNARTTTPRNNP-PAQKTNPPAQKTNPPAQKTNP 190


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +1

Query: 13 ERSGKSFLFCLSVXVPWNPXXG 78
          + S KSFL  LS   PWNP  G
Sbjct: 17 DNSPKSFLDTLSSSSPWNPSKG 38


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -2

Query: 418 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYII 239
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ +   ++
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYS-YDRPLL 407

Query: 238 LSTRGSSP 215
             T G+SP
Sbjct: 408 HITPGASP 415


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -2

Query: 418 LRPHYIKILTR*NEHNARTSTRPGTGRIRFPSKPDTPRSSEPILIPKLRIQFADFLTYII 239
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ +   ++
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYS-YDRPLL 407

Query: 238 LSTRGSSP 215
             T G+SP
Sbjct: 408 HITPGASP 415


>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
           domain-containing protein / RING finger
           domain-containing protein similar to transcription
           factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
           contains Pfam profiles PF00271: Helicase conserved
           C-terminal domain, PF00176: SNF2 family N-terminal
           domain, PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 981

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -2

Query: 241 ILSTRGSSPWRPAADMGTNRRDISTYIPHLNFQGPQRVSGHRR 113
           I  TR      P    G++RRD+ST  PH         +GH +
Sbjct: 15  IQETRTRPQHPPRIAEGSHRRDLSTLRPHFLSGSSSGANGHTK 57


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,577,160
Number of Sequences: 28952
Number of extensions: 198302
Number of successful extensions: 624
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)