Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0210
         (703 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.12 
SPCP1E11.08 |||ribosome biogenesis protein Nsa2 |Schizosaccharom...    29   0.64 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.64 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   2.6  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    27   3.4  
SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr ...    26   4.5  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.0  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   7.9  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   7.9  
SPBC14C8.02 |tim44||TIM23 translocase complex subunit Tim44|Schi...    25   7.9  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   7.9  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 431 SGCGRCRVWSMFVRYVRFSELVF*YNRPQKLYIF 532
           +GCG+  VW  +VR+V F E    +     LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPCP1E11.08 |||ribosome biogenesis protein Nsa2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 260

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
 Frame = -1

Query: 643 ARNETDTTLRLGRSAEGRRTRVRIQSE-T*DDFRECHIKYIQFLRPIILKY*LAKTNITH 467
           A  E    +R G+S +    R+  ++    D F    +KY +F+RP+ L+    K N+TH
Sbjct: 128 AEEEMFKVIRTGKSKKNSWKRMITKATFVGDGFTRRPVKYERFIRPMALRQ--KKANVTH 185

Query: 466 E 464
           +
Sbjct: 186 K 186


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -3

Query: 614 ARKIRGRPENAGPDPVRNVRRFSRV 540
           AR I GRPEN G   ++N+ R S+V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 158 PWNPIEGRYGSEREEHRICGGVRILSADLENSVRDVRGDVAP 283
           P+ P+EG Y + ++ HRI    R   A LE  +R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 6/80 (7%)
 Frame = -2

Query: 438 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 274
           HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313

Query: 273 -SPRTSLTEFSRSAESIRTP 217
            SP+ ++ ++    +SI TP
Sbjct: 314 VSPKYTIQQY---VQSIGTP 330


>SPAC5D6.07c |||PXA domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 495

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
 Frame = -3

Query: 698 RASSELTVERRS-YRMCRSRTKRNRHDLTARKIRGRPENAGPDPVRNVRRFS 546
           R  S+ +  RRS YR   S + ++ ++L+  K +  P  + P P+ N+ + S
Sbjct: 304 RRFSQSSYPRRSNYRRRISTSSKSLYELSPSKFKSIPITSNPPPMLNLSKGS 355


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -2

Query: 210 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 73
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -2

Query: 468 TNIDQTRHRPHPLPVQTRHAPV 403
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 356 FPYLHYSID*RLFTLETCCGYGYEPARHL 270
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC14C8.02 |tim44||TIM23 translocase complex subunit
           Tim44|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 427

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +3

Query: 567 DWIRTRVLRPSADLPSRKVVSVSFRARSAHSVRPPFNGQLRTGTD 701
           D +  R+L+P+ D+P   V  V+FR +  H  +   +G+L  G D
Sbjct: 346 DIMSQRLLQPN-DIP---VFIVTFRTQEVHMFKDASSGELVAGKD 386


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -2

Query: 387  YSEVTDPICRLPLPTLFYRLEALHLGDLLRIWVRTGATSPRTSLTEFSRSAESIRTPPQM 208
            Y   +  +  L +P+L  RL A+HLG   +I ++    +P   +T  ++   +  TPP +
Sbjct: 1093 YKAKSSLLVTLKIPSLIPRLRAIHLGK-GKIVIK---KAPLKQITSKTKEKSTSPTPPSI 1148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,040,111
Number of Sequences: 5004
Number of extensions: 65390
Number of successful extensions: 190
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)