Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0209
         (628 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    28   1.3  
SPCC338.10c |cox5||cytochrome c oxidase subunit V|Schizosaccharo...    27   1.7  
SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family |S...    27   1.7  
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro...    26   3.9  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   5.1  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   6.8  
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch...    25   9.0  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    25   9.0  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   9.0  
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar...    25   9.0  

>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -3

Query: 422 PAIRFREDTPDIKALREKEKGDWRKLTLEEK 330
           P   FR +  + K  RE++K +W+K   E+K
Sbjct: 110 PPAWFRREMGEWKKAREEDKAEWKKAREEDK 140



 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -3

Query: 404 EDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAEFQAPTGEWK 261
           ED  + K  RE++K +W+K   E+K    +A   +   E++    EW+
Sbjct: 149 EDKAEWKKAREEDKAEWKKAREEDKAEWKKAR--EEDKEWRNSMDEWR 194



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 404 EDTPDIKALREKEKGDWRKLTLEEK 330
           ED  + K  RE++K +W+K   E+K
Sbjct: 127 EDKAEWKKAREEDKAEWKKAREEDK 151



 Score = 26.6 bits (56), Expect = 2.9
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 404 EDTPDIKALREKEKGDWRKLTLEEK 330
           ED  + K  RE++K +W+K   E+K
Sbjct: 138 EDKAEWKKAREEDKAEWKKAREEDK 162


>SPCC338.10c |cox5||cytochrome c oxidase subunit
           V|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 174

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 186 SPIPDSLSEERQKAQLQRMLDLKVNPIDGLASK 88
           +P P +++ E Q+   + M + K+NPI G AS+
Sbjct: 121 APSPRTMTREWQEKSNEYMKENKINPISGEASE 153


>SPAC8F11.04 |||U3 snoRNP-associated protein Cic1/Utp30 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 373

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 37  LASAVSNLLPAVV-FVVPLGGKSIDGIHLKVQHSLELSL 150
           LA  V ++L  V   +VP G K I  IHLK   S+ + L
Sbjct: 213 LAENVESILQFVSKHIVPDGAKGIASIHLKTSQSIAIPL 251


>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 240

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/28 (57%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
 Frame = -3

Query: 389 IKALREKEKGDWRK---LTLEEKKTLYR 315
           I+ALREK K    K   L LEEKKT Y+
Sbjct: 49  IEALREKAKEKKEKERILALEEKKTNYK 76


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 592  MANYLMRRALINAIRV--PVCARAGSTGNTNLPRLVTVS 482
            +AN++  R L+ +I    P CAR GST    L  L+ ++
Sbjct: 1333 IANFIPTRLLMKSIFAAWPECARLGSTAALRLLELIELA 1371


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 180 IPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 73
           +P  +  ERQ   ++ +L+   +P+DG  ++ DY N
Sbjct: 27  LPKIVLSERQFCDVELILNGGFSPLDGFMNQKDYLN 62


>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 245

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -3

Query: 401 DTPDIKALREKEKGDWRKLTLEEKKTLYRA 312
           D P I + R+ E    RKL+ +EKKTL +A
Sbjct: 194 DNPTIHS-RQLESMAGRKLSTDEKKTLKKA 222


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 294 R*VPGPHRRVEGSLGWALVLSSLAAWIYM 208
           R V  P R +  S  W L L S +AWI++
Sbjct: 540 RYVNNPERFLGCSAYWGLALISSSAWIFL 568


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 615 SSPILPAKWPII*CAGRSSMLSV 547
           S+ +LP+  PI+   GRSS LSV
Sbjct: 431 SATVLPSSTPILLPRGRSSTLSV 453


>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 341 GSICANHP-FLFHGEP*CQGCPHGTGWQAGGSQACL 445
           G  C+  P ++   E   QGCP G+   AGG+  C+
Sbjct: 285 GDTCSGLPCYVDPRENGVQGCPEGSPIGAGGACFCV 320


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,811,890
Number of Sequences: 5004
Number of extensions: 59134
Number of successful extensions: 143
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)