Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0209
(628 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0040 + 31240164-31241102,31241280-31241897 28 5.3
03_01_0133 - 1057679-1057880,1058112-1058377 28 5.3
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398... 28 7.0
12_02_1125 - 26327433-26328239 27 9.2
10_08_0508 - 18416688-18416795,18417058-18417477 27 9.2
08_01_0217 + 1738321-1739104,1739683-1739915,1740002-1740292,174... 27 9.2
08_01_0107 - 789217-789984,790070-790219,790303-790890,790968-79... 27 9.2
06_03_0849 - 25344261-25344416,25344652-25344808,25344917-253450... 27 9.2
02_05_0874 - 32377906-32378131,32378269-32378384,32378516-323789... 27 9.2
02_02_0652 - 12651163-12653210,12653327-12653627 27 9.2
01_01_0525 - 3854508-3854924 27 9.2
>03_06_0040 + 31240164-31241102,31241280-31241897
Length = 518
Score = 28.3 bits (60), Expect = 5.3
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 177 PDSLSEERQKAQ-LQRMLDLKVNPIDGLASKWDY 79
PD+ ++ +AQ L+ +LD ++NP+ G A+ WDY
Sbjct: 202 PDADTDMSMEAQELRHVLD-ELNPLIGAANLWDY 234
>03_01_0133 - 1057679-1057880,1058112-1058377
Length = 155
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 186 CTQ--RLSWPCRSKQPKMRGLEP 248
CT+ RL WPCR QP +GL P
Sbjct: 64 CTRGARLGWPCR--QPNTKGLHP 84
>01_01_0543 +
3985771-3985866,3985965-3986145,3986668-3986780,
3986854-3987190,3987602-3987603,3987661-3987743,
3988017-3988116,3988330-3988463,3988711-3988788,
3989333-3989387,3990159-3990239,3990369-3990567,
3990609-3990699,3990770-3990892,3991440-3991528,
3992450-3992539,3992619-3992792,3992911-3993035,
3993246-3993372,3993826-3993998
Length = 816
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 1/71 (1%)
Frame = -3
Query: 572 PGAHQCYPCSCLRQGWIHWKH*LAKIGDREWVGYGFNGQP-NYVDRPDFPLPAIRFREDT 396
P +C C W++ + G R W G G N + ++ +PL A++ T
Sbjct: 178 PTGWKCSKCDKTENLWLNLTDGMILCGRRLWDGSGGNNHAIEHYEQTKYPL-AVKLGTIT 236
Query: 395 PDIKALREKEK 363
D++A +K
Sbjct: 237 ADLEAAERHKK 247
>12_02_1125 - 26327433-26328239
Length = 268
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -2
Query: 570 GRSSMLSV-FLSAPGLDPLETLTCQDW*P*VGRLWFQRPAQLRRQA*LPPACHPVP*GHP 394
G SS L V L+ PG PL C ++ +G W + + R + LP CHPVP G P
Sbjct: 193 GSSSPLPVGTLALPGAPPL---LCGEF---LG--WIEAATRQRGKPRLPKQCHPVP-GSP 243
>10_08_0508 - 18416688-18416795,18417058-18417477
Length = 175
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = -2
Query: 471 WFQRPAQLRRQA*LPPACHPVP*GHP 394
W + A+ R + LP CHPVP G P
Sbjct: 92 WIETAARQRGKLRLPKQCHPVP-GSP 116
>08_01_0217 +
1738321-1739104,1739683-1739915,1740002-1740292,
1740524-1740616,1740912-1741040,1741522-1741695,
1741883-1741990,1742073-1742279
Length = 672
Score = 27.5 bits (58), Expect = 9.2
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 404 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 315
ED P I L + +GDW + + E T YR
Sbjct: 212 EDPPRILHLNPRLRGDWSQRPIIEHNTCYR 241
>08_01_0107 -
789217-789984,790070-790219,790303-790890,790968-791093
Length = 543
Score = 27.5 bits (58), Expect = 9.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 440 RPDFPLPAIRFREDTPDIKALREKEKGDWRK 348
+ D P A R R+DT D K RE+ + +RK
Sbjct: 24 KDDSPNKAARLRDDTDDDKGKRERRRWLFRK 54
>06_03_0849 -
25344261-25344416,25344652-25344808,25344917-25345056,
25345160-25345295,25345392-25345663,25345809-25346068,
25346716-25347035,25347287-25347352,25347439-25347510,
25347609-25347680,25347776-25347858,25348068-25348139,
25348389-25348485,25348918-25349050,25349158-25349236
Length = 704
Score = 27.5 bits (58), Expect = 9.2
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 410 TGWQAGGSQACLRSWAG 460
TGW AGG C +W G
Sbjct: 44 TGWSAGGGDPCGAAWMG 60
>02_05_0874 -
32377906-32378131,32378269-32378384,32378516-32378921,
32379023-32379139,32379229-32379291,32380183-32380373
Length = 372
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 40 ASAVSNLLPAVVFVVPLGGKSIDGIHLKVQHSLELSLLPLFTQ*VRNRTVHKDFHGHV 213
ASA+ N+LPAV FV+ L + ++ + LK HS LFT V + +HG V
Sbjct: 105 ASALINVLPAVTFVMALVLR-MEKVKLKSVHSQAKIAGTLFT--VAGAVLMVLYHGPV 159
>02_02_0652 - 12651163-12653210,12653327-12653627
Length = 782
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 627 FSYNSSPILPAKWPII*CAGRSSMLSVFLSAPGLD 523
+ +P++P+KW + GR+ +LS F LD
Sbjct: 554 YDVTGTPVMPSKWIHVVAVGRTWLLSAFALINFLD 588
>01_01_0525 - 3854508-3854924
Length = 138
Score = 27.5 bits (58), Expect = 9.2
Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Frame = -3
Query: 494 GDREWVGY-GFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRK--LTLEEKKT 324
G + W G++GQP+Y+D PA R E P+ A E+ G ++ + EEK
Sbjct: 48 GGKWWAPLLGWSGQPDYIDAQ----PAAR-EEARPNPMAAAEQRGGGGKRFGVLTEEKAR 102
Query: 323 LYRASFCQT 297
RA +T
Sbjct: 103 QLRARMMET 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,056,771
Number of Sequences: 37544
Number of extensions: 427482
Number of successful extensions: 1039
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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