Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0209
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.77 
SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)                    30   1.8  
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   2.3  
SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)                   28   7.1  
SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)                   28   7.1  
SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  27   9.4  

>SB_48167| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 19/47 (40%), Positives = 30/47 (63%)
 Frame = -3

Query: 428 PLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYRASFCQTFAE 288
           P+P  R +E   D++AL+ KEKG W  L+ E++  LY++ F +T  E
Sbjct: 26  PVPIAR-QEFGSDLEALKAKEKGPWTALSKEDRVALYQSQFPKTLQE 71


>SB_22289| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1102

 Score = 31.1 bits (67), Expect = 0.77
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +2

Query: 347 ICANHPFLFHGEP*CQGCPHGTGWQAGGSQACLRSWAGR 463
           IC +  FL      CQ CP GT  +A G  AC+    G+
Sbjct: 567 ICVSGKFLNTTTLSCQVCPKGTFQEANGKTACIPCTGGK 605


>SB_11138| Best HMM Match : Yippee (HMM E-Value=6.1)
          Length = 336

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = -3

Query: 134 ECWTLR*IPSMDLPPSGTTKTTAGSK 57
           +C T+R IPS D+P +G  KT  GS+
Sbjct: 170 QCNTIRGIPSFDMPFNGVLKTGNGSQ 195


>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 362

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -3

Query: 356 WRKLTLEEKKTLYRASFCQTFAEFQAPTGEW 264
           WRK +  EKK +     C+T + +  P+G W
Sbjct: 210 WRKASHAEKKVVRACPICRTPSGYVVPSGVW 240


>SB_12484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
 Frame = +2

Query: 530 PGADRNTDSIDERPAH---QIIGHFAGRIGL 613
           P  +    +IDE+PAH   Q +GH AG I L
Sbjct: 14  PIFEEEMQNIDEKPAHENLQAMGHMAGSISL 44


>SB_57237| Best HMM Match : RRM_1 (HMM E-Value=0.071)
          Length = 210

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -2

Query: 339 RRKENSVQSFILSDLR*VPGPHRRVEGSLGWALVLSSL 226
           R KE  V  ++LSD   V GPH+R++ S  W + +  L
Sbjct: 71  RCKEVQVIPWVLSDTNYVRGPHQRLDTS--WTVFVGGL 106


>SB_54712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 28  KCLLASAVSNLLPAVVFVVPLGGKSIDG 111
           KC+LA  + +L+P V+   P+ G  +DG
Sbjct: 53  KCMLACEIFSLVPGVLIGFPVVGFPVDG 80


>SB_48118| Best HMM Match : DUF1314 (HMM E-Value=3.2)
          Length = 341

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 377 REKEKGDWRKLTLEEKKTLYRASFCQT 297
           RE  + D ++  +E+KK + +A+FCQT
Sbjct: 77  REILENDEKRCPIEDKKKVKKATFCQT 103


>SB_45209| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 995

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/32 (46%), Positives = 16/32 (50%)
 Frame = +2

Query: 389 CQGCPHGTGWQAGGSQACLRSWAGR*NHSLPT 484
           C+ CP GT     GS  CLR   G    SLPT
Sbjct: 612 CKPCPSGTFTDVPGSSECLR--CGANTVSLPT 641


>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/66 (27%), Positives = 27/66 (40%)
 Frame = -1

Query: 547 VPVCARAGSTGNTNLPRLVTVSG*AMVSTASPTT*TGLTSPCLPSGSVRTPLTLRLSVKK 368
           +P   RA +     L +          + +SP+T     SP  P  +   P TL L ++K
Sbjct: 659 IPRKKRAAAISAAQLQKRARSLSLPCTAASSPSTPASSPSPTPPLSNSLPPSTLSLMLRK 718

Query: 367 KRVIGA 350
           KR   A
Sbjct: 719 KRTSNA 724


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,325,625
Number of Sequences: 59808
Number of extensions: 476425
Number of successful extensions: 1321
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1320
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)