Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0209
         (628 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical pr...    95   3e-20
Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z36752-3|CAA85325.1|  422|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U39678-10|AAV28360.1|  436|Caenorhabditis elegans Hypothetical p...    27   8.3  

>Z82077-6|CAB63334.1|  175|Caenorhabditis elegans Hypothetical
           protein W09C5.8 protein.
          Length = 175

 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 45/80 (56%), Positives = 54/80 (67%)
 Frame = -3

Query: 500 KIGDREWVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKALREKEKGDWRKLTLEEKKTL 321
           K   RE VGYG NG   Y DR D+  PAIRFR++   I  +R KE+ DW+ L+ EEKK L
Sbjct: 29  KAAGRELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLL 88

Query: 320 YRASFCQTFAEFQAPTGEWK 261
           YR SF QT +EF+APTG WK
Sbjct: 89  YRYSFRQTLSEFEAPTGYWK 108



 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 23/64 (35%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
 Frame = -2

Query: 246 ALVLSSLAAWIYMA--MKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKWDYEN 73
           A++LS L    Y A  + V VY  +P +   E ++AQ++R L L+     G  + +DYEN
Sbjct: 112 AVILSVLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQVERALVLEKGQFLGAPTHYDYEN 171

Query: 72  NRWK 61
            +WK
Sbjct: 172 KKWK 175


>Z81491-7|CAI46570.1|  184|Caenorhabditis elegans Hypothetical
           protein D1086.11 protein.
          Length = 184

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 243 LVLSSLAAWIYMAMKVFVYSPIPDSLSEERQKAQLQRMLDLKVNPIDGLASKW---DYEN 73
           ++   L   + ++  V+  SP+  S  EE QK      LD++ NP D    KW   DY++
Sbjct: 1   MIWQVLITLVVLSATVYSESPLTPSKIEECQKT-CGVPLDIRTNPDDTKCKKWNNCDYDD 59

Query: 72  NR 67
            +
Sbjct: 60  RK 61


>U29488-12|AAA68769.3|  617|Caenorhabditis elegans Hypothetical
           protein C56C10.1 protein.
          Length = 617

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +3

Query: 420 RQGEVRPVYVVGLAVETIAYPLTVTNLGKLVFPVD 524
           RQ +  PV + G + E + +     + GKL FPVD
Sbjct: 224 RQLDPVPVLLTGASYEGLLHEFFTIDCGKLAFPVD 258


>Z36752-3|CAA85325.1|  422|Caenorhabditis elegans Hypothetical
           protein F35H8.3 protein.
          Length = 422

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -1

Query: 148 GSAPENVGP*GESHRWTCLQVGLRKQPLEVNLILHWRVNT 29
           G  PE++ P G+S R++C    LR    + ++++H R++T
Sbjct: 285 GPPPEDLLPNGKSARYSCSYCNLRFH-FKKDMLVHERIHT 323


>U39678-10|AAV28360.1|  436|Caenorhabditis elegans Hypothetical
           protein C39D10.11 protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = -1

Query: 229 FGCLDLHGHESLCVQSYS*LIE*REAEGSAPE 134
           FGC D HG + LC+     L+   + +G+  E
Sbjct: 10  FGCFDYHGAKLLCIDEAKNLVLISQTDGTDVE 41


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,596,232
Number of Sequences: 27780
Number of extensions: 340064
Number of successful extensions: 918
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 916
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)