Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0209
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g34450.1 68415.m04227 high mobility group (HMG1/2) family pro...    31   0.63 
At3g23070.1 68416.m02908 expressed protein contains Pfam domain,...    29   1.9  
At1g28440.1 68414.m03496 leucine-rich repeat transmembrane prote...    29   1.9  
At1g80030.3 68414.m09368 DNAJ heat shock protein, putative simil...    29   2.5  
At1g80030.2 68414.m09367 DNAJ heat shock protein, putative simil...    29   2.5  
At1g80030.1 68414.m09366 DNAJ heat shock protein, putative simil...    29   2.5  
At1g60780.1 68414.m06842 clathrin adaptor complexes medium subun...    29   2.5  
At5g64950.1 68418.m08170 mitochondrial transcription termination...    29   3.3  
At1g24490.1 68414.m03084 60 kDa inner membrane family protein si...    29   3.3  
At5g61580.1 68418.m07727 phosphofructokinase family protein simi...    28   5.8  
At4g36670.1 68417.m05203 mannitol transporter, putative similar ...    28   5.8  
At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger) fa...    27   7.7  
At1g74800.1 68414.m08666 galactosyltransferase family protein co...    27   7.7  

>At2g34450.1 68415.m04227 high mobility group (HMG1/2) family
           protein similar to HMG protein [Arabidopsis thaliana]
           GI:2832361; contains Pfam profile PF00505: HMG (high
           mobility group) box
          Length = 151

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 3/35 (8%)
 Frame = -3

Query: 413 RFREDTPDIKALRE--KEKGD-WRKLTLEEKKTLY 318
           +++E+ PD+K++RE  K  G+ W+ +T EEK   Y
Sbjct: 80  QYQEENPDVKSMREIGKTCGEKWKTMTYEEKVKYY 114


>At3g23070.1 68416.m02908 expressed protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 881

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/60 (31%), Positives = 24/60 (40%)
 Frame = +3

Query: 9   SLHYNPEVFTRQCSIKFTSSGCFRSPTWRQVHRWDSP*GPTFSGAEPSASLHSMSQE*DC 188
           SLH+ P   T++    F SS CFR   +       S  G TFS      +    S   DC
Sbjct: 6   SLHFCPTTVTKKFVYSFQSSFCFRFLRYSSSISLGSCKGVTFSSRNDQIASRRFSFSRDC 65


>At1g28440.1 68414.m03496 leucine-rich repeat transmembrane protein
           kinase, putative similar to receptor kinase GI:4105699
           from [Arabidopsis thaliana]
          Length = 996

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 624 SYNSSPILPAKWPII*CAGR-SSMLSVFLSAPGL-DPLETLTCQ 499
           S+NS+   P +W  + CAG  SS+ SV LS+  L  P  ++ C+
Sbjct: 39  SWNSNDASPCRWSGVSCAGDFSSVTSVDLSSANLAGPFPSVICR 82


>At1g80030.3 68414.m09368 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 236 RTRAQPRLPSTLRWGP-GTQRRSDRMK 313
           RTRA+P+ PSTL   P G++ + D +K
Sbjct: 439 RTRAKPQQPSTLSTAPSGSENKKDEVK 465


>At1g80030.2 68414.m09367 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 236 RTRAQPRLPSTLRWGP-GTQRRSDRMK 313
           RTRA+P+ PSTL   P G++ + D +K
Sbjct: 439 RTRAKPQQPSTLSTAPSGSENKKDEVK 465


>At1g80030.1 68414.m09366 DNAJ heat shock protein, putative similar
           to SP|Q05646 Chaperone protein dnaJ {Erysipelothrix
           rhusiopathiae}; contains Pfam profiles PF00226: DnaJ
           domain, PF01556: DnaJ C terminal region, PF00684: DnaJ
           central domain (4 repeats)
          Length = 500

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 236 RTRAQPRLPSTLRWGP-GTQRRSDRMK 313
           RTRA+P+ PSTL   P G++ + D +K
Sbjct: 439 RTRAKPQQPSTLSTAPSGSENKKDEVK 465


>At1g60780.1 68414.m06842 clathrin adaptor complexes medium subunit
           family protein contains Pfam profile: PF00928 adaptor
           complexes medium subunit family
          Length = 428

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -3

Query: 482 WVGYGFNGQPNYVDRPDFPLPAIRFREDTPDIKA 381
           W    F G   Y+ R +F LP+I   E TP+ KA
Sbjct: 346 WKIKSFPGNKEYMLRAEFHLPSITAEEATPERKA 379


>At5g64950.1 68418.m08170 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 391

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 21/56 (37%), Positives = 27/56 (48%)
 Frame = +2

Query: 107 MGFTLRSNILWS*AFCLSSLNESGIGLYTKTFMAM*IQAAKDERTRAQPRLPSTLR 274
           +GFTL S +L      LSSL+E       K FMA     ++DE T    R P  +R
Sbjct: 226 LGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMAN--GFSEDEITDIIRRSPGLIR 279


>At1g24490.1 68414.m03084 60 kDa inner membrane family protein
           similar to chloroplast membrane protein (ALBINO3)
           (GI:3927828) [Arabidopsis thaliana]
          Length = 1013

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -3

Query: 419 AIRFREDTPDIKALREKEKGDWRKLTLEEKKTLYR 315
           A+  +  TP IKA++E+  GD  K+ LE  + LY+
Sbjct: 666 AMAMKSLTPQIKAIQERYAGDQEKIQLETAR-LYK 699


>At5g61580.1 68418.m07727 phosphofructokinase family protein similar
           to phosphofructokinase [Amycolatopsis methanolica]
           GI:17432243; contains Pfam profile PF00365:
           Phosphofructokinase
          Length = 530

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 467 FNGQPNYVDRPDFPLPAIRFREDTPDIKALREK 369
           FN   N + R DFPLPA++ ++ +   + L +K
Sbjct: 18  FNPSSNVLPRRDFPLPALKLKKVSVLPRILHQK 50


>At4g36670.1 68417.m05203 mannitol transporter, putative similar to
           mannitol transporter [Apium graveolens var. dulce]
           GI:12004316; contains Pfam profile PF00083: major
           facilitator superfamily protein
          Length = 493

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 261 GSLGWALVLSSLAAWIYMAMKVFVYSPIPDSLSEE 157
           G L WALVLS +AA+ ++A       PI    S E
Sbjct: 370 GKLAWALVLSIVAAYSFVAFFSIGLGPITWVYSSE 404


>At2g20650.2 68415.m02422 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 559

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 336 FEGQFAPITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKLVF 515
           F     PI L  ++  +         D R+  + P Y++G+ V  +A PL V    K   
Sbjct: 391 FHNYMRPILLLMYSFWIPQIVANVVRDSRK-PLHPYYILGMTVTRLAIPLYVFGCPKNFM 449

Query: 516 PVDPALAQTGTRIALM 563
            V+P+ A   +  A M
Sbjct: 450 RVEPSKAWCVSLCAFM 465


>At2g20650.1 68415.m02421 zinc finger (C3HC4-type RING finger)
           family protein
          Length = 559

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/76 (26%), Positives = 32/76 (42%)
 Frame = +3

Query: 336 FEGQFAPITLFFFTESLNVRGVLTEPDGRQGEVRPVYVVGLAVETIAYPLTVTNLGKLVF 515
           F     PI L  ++  +         D R+  + P Y++G+ V  +A PL V    K   
Sbjct: 391 FHNYMRPILLLMYSFWIPQIVANVVRDSRK-PLHPYYILGMTVTRLAIPLYVFGCPKNFM 449

Query: 516 PVDPALAQTGTRIALM 563
            V+P+ A   +  A M
Sbjct: 450 RVEPSKAWCVSLCAFM 465


>At1g74800.1 68414.m08666 galactosyltransferase family protein
           contains Pfam profile: PF01762 galactosyltransferase
          Length = 672

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -3

Query: 404 EDTPDIKALREKEKGDWRKLTLEEKKTLYR 315
           ED P I     + KGDW K  + E+ + YR
Sbjct: 241 EDPPRILHFNPRLKGDWSKKPVIEQNSCYR 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,010,663
Number of Sequences: 28952
Number of extensions: 328866
Number of successful extensions: 798
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 798
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)