Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0205
         (772 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   2.0  
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    23   3.6  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   4.7  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   8.2  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.2  

>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
 Frame = -1

Query: 367 NYLFYPLLLDVSKT*LRSPIYVVNKYT---I*YKSTSFVDHGF 248
           N ++ P +  +SKT   SPI+++   T   + Y       HGF
Sbjct: 482 NGMYRPSIYFISKTLAESPIFIIIPVTLTSVCYFMIGLNSHGF 524


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 161 MEKNTNFSMFIVRKQNI--RKVDIRL 232
           +E++ NFS+FI + + I  R +DI L
Sbjct: 74  LERDANFSLFIPKHRRIAGRLIDIFL 99


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -1

Query: 367 NYLFYPLLLDVSKT*LRSPIYVV 299
           N ++ P +  +SKT   SPI+++
Sbjct: 482 NGMYRPSIYFISKTLAESPIFII 504


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 765 PGPVYFDMTGATCLW 721
           P  +YFD+   TC W
Sbjct: 76  PAGLYFDIDKQTCDW 90


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = -1

Query: 490 RQLEKTSISLKISSAQ--SDNSEGTLTKTALP 401
           R LEKTS  LKI  A+  +  ++  L   +LP
Sbjct: 169 RALEKTSEELKIPKAKINTGKTQYNLNSKSLP 200


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,317
Number of Sequences: 336
Number of extensions: 3749
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20753800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)