Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0205
         (772 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    26   5.2  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    26   6.9  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +3

Query: 396 VHGSAVFVNVPSELSDCAELILSEIDVFSNCLTTYRKNLSR 518
           VHG  +  ++PS+  D  E  + +ID+    L  +R+ +++
Sbjct: 68  VHGGILARDIPSDEKDLVEQSIEKIDIVVCNLYPFRETIAK 108


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +3

Query: 135 RNHDNVLQQWKRIL 176
           R+HD VLQ WK+++
Sbjct: 568 RDHDGVLQTWKKLI 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,423
Number of Sequences: 5004
Number of extensions: 61662
Number of successful extensions: 125
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)