Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0205
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0979 + 21389457-21389469,21390053-21390139,21390253-213903...    29   5.4  
11_01_0676 - 5511755-5511831,5512857-5513052,5513462-5513577,551...    28   9.5  

>04_03_0979 +
           21389457-21389469,21390053-21390139,21390253-21390359,
           21390652-21390768,21391154-21391199,21392518-21392591,
           21392785-21392838,21392926-21393030,21393126-21393184,
           21393273-21393483,21393640-21393699
          Length = 310

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 204 CLRTMNMLKLVFFSIAEVHYHGFYSANNLDIHTFTCE 94
           CL+T  +  + ++ + ++ Y   Y + N  IHT T E
Sbjct: 103 CLKTWQVCTVQYWYLGQILYKSLYVSRNTYIHTGTAE 139


>11_01_0676 -
           5511755-5511831,5512857-5513052,5513462-5513577,
           5513752-5514597,5515515-5515766,5522344-5525206
          Length = 1449

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +3

Query: 366 LNKILWDYNNVHGSAVFVNVPSELSDCAELILSEIDVFSNCLTTYRKNLS-RIIS 527
           L K++  +NN+ G+  F++  SE     +LIL   + F   L  +  NLS R+IS
Sbjct: 402 LQKLVLPHNNLEGNMGFLSSLSECRQLEDLILDH-NSFVGALPDHLGNLSARLIS 455


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,047,495
Number of Sequences: 37544
Number of extensions: 332722
Number of successful extensions: 556
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)