Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0204
         (797 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.47 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   5.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   5.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   5.7  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    22   7.6  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    22   7.6  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   7.6  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 17/90 (18%), Positives = 37/90 (41%), Gaps = 1/90 (1%)
 Frame = -1

Query: 746 CPFAPREVSVLAELALGHLRYSLTDVPPQSNSPPGSVLEPDHAG-VLNGDERFRHVTTLH 570
           C  +P   S+ + L+   +  +  +   Q NSP  +   P H+G   +     R  ++++
Sbjct: 30  CTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSGSSASTSPAARTTSSMY 89

Query: 569 AWNETPCARRYYRPRTASAQRVSNETMKVV 480
            +     A  +++ + A A      T  +V
Sbjct: 90  PYVSAAAAHHHHQQQQAVAAAAFGATSSMV 119


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 64  RTESCRSRTKRNRHD 20
           RT SC SR + +RH+
Sbjct: 226 RTSSCHSRYEDSRHE 240


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 444 VGDRFARSSLKNHYFHCFI 500
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 444 VGDRFARSSLKNHYFHCFI 500
           + +  A   L+N Y+ CFI
Sbjct: 32  IDEILANDRLRNQYYDCFI 50


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 472 SDDRAKRSPTYATPLMSPYNARLESSSTGSSFPADSP 362
           +D R   SP   TP+ + Y   +E+ +  S F  D+P
Sbjct: 21  NDKRIYLSPR--TPIKNVYKNNIETKNQLSPFNIDTP 55


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,856
Number of Sequences: 438
Number of extensions: 5250
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)