Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0204
         (797 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family prot...    29   3.6  
At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S...    29   4.7  
At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) str...    29   4.7  
At1g77240.1 68414.m08996 AMP-binding protein, putative strong si...    29   4.7  
At1g75540.1 68414.m08779 zinc finger (B-box type) family protein...    29   4.7  
At1g65210.1 68414.m07393 hypothetical protein                          29   4.7  
At4g27730.1 68417.m03985 oligopeptide transporter OPT family pro...    28   6.2  
At1g17680.2 68414.m02189 transcription factor-related low simila...    28   6.2  
At1g17680.1 68414.m02188 transcription factor-related low simila...    28   6.2  
At3g62370.1 68416.m07006 expressed protein                             28   8.3  

>At5g64380.1 68418.m08087 fructose-1,6-bisphosphatase family protein
           similar to SP|P22418 Fructose-1,6-bisphosphatase,
           chloroplast precursor (EC 3.1.3.11)
           (D-fructose-1,6-bisphosphate 1-phosphohydrolase)
           (FBPase) {Spinacia oleracea}; contains Pfam profile
           PF00316: fructose-1,6-bisphosphatase
          Length = 404

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = -2

Query: 439 ATPLMSPYNARLESSSTGSSFPADSPKPVPLAVVSLD 329
           A+ + SP+N+ L   S  SS  +D   P PL +VS D
Sbjct: 105 ASLVASPFNSSLGKLSVNSSSGSDRDAPKPLDIVSND 141


>At5g02870.1 68418.m00230 60S ribosomal protein L4/L1 (RPL4D) 60S
           roibosomal protein L4, Arabidopsis thaliana,
           EMBL:CAA79104
          Length = 407

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 242 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 132
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 33  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 69


>At3g09630.1 68416.m01142 60S ribosomal protein L4/L1 (RPL4A) strong
           similarity to 60S ribosomal protein L1 GB:P49691
          Length = 406

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 9/37 (24%), Positives = 22/37 (59%)
 Frame = -1

Query: 242 IVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHRNA 132
           ++T  V P ++ F+H  I +  ++ + V+ + GH+ +
Sbjct: 32  VMTAPVRPDIVNFVHAQISNNSRQPYAVSKKAGHQTS 68


>At1g77240.1 68414.m08996 AMP-binding protein, putative strong
           similarity to AMP-binding protein GI:1903034 from
           [Brassica napus]; contains Pfam AMP-binding domain
           PF00501
          Length = 545

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 671 VPPQSNSPPGSVLE-PDHAGVLNGDE-RFRHVTTLHAWNET 555
           +P  SNS P +VL   + A  + GD     H TT+H W+ET
Sbjct: 5   LPHASNSCPLTVLGFLERAASVFGDSPSLLHTTTVHTWSET 45


>At1g75540.1 68414.m08779 zinc finger (B-box type) family protein
           similar to zinc finger protein GB:BAA33202 GI:3618312
           from [Oryza sativa]
          Length = 331

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = -1

Query: 767 TSDQASFCPFAPREVSVLAELALGHLRYSLTDVPPQSNS 651
           T+D+AS C     +V    +LA  HLR+SL   P  SN+
Sbjct: 18  TADEASLCGGCDHQVHHANKLASKHLRFSLL-YPSSSNT 55


>At1g65210.1 68414.m07393 hypothetical protein
          Length = 248

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 650 GSLTGAVHLSKNNAGVLRPAQRGQKPRVEQKGKSWLDPMFSTHRD 784
           G +TG  +   NN  VL P QR ++  V +  K+ ++P++  H D
Sbjct: 46  GLITGIKYKGVNN--VLHPHQRAREYFVPEPYKNTMNPLYLNHTD 88


>At4g27730.1 68417.m03985 oligopeptide transporter OPT family
           protein similar to SP|P40900 Sexual differentiation
           process protein isp4 {Schizosaccharomyces pombe},
           oligopeptide transporter Opt1p [Candida albicans]
           GI:2367386; contains Pfam profile PF03169: OPT
           oligopeptide transporter protein
          Length = 736

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
 Frame = -1

Query: 530 PRTASAQRVSNETMKVVVFQRRS---RETISHLCYTSHVSLQCQTRVKLNRVFF 378
           PR+    +V+   + VVV+   +    E I HLC TS +    Q    ++RVFF
Sbjct: 523 PRSMFMAQVAGTLVAVVVYTGTAWWLMEEIPHLCDTSLLPSDSQWTCPMDRVFF 576


>At1g17680.2 68414.m02189 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -3

Query: 663 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTSK 502
           P +L AW C  +      KR        H  R +     PPIL   H F  TS+
Sbjct: 692 PYRLNAWNCYYSVISRLGKRASTEAKFMHHLRSKYRDCVPPILIAGHHFTVTSR 745


>At1g17680.1 68414.m02188 transcription factor-related low
           similarity to SP|P33339 Transcription factor tau 131 kDa
           subunit (TFIIIC 131 kDa subunit) Saccharomyces
           cerevisiae, transcription factor IIIC102 short isoform
           [Homo sapiens] GI:18481637
          Length = 896

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 17/54 (31%), Positives = 21/54 (38%)
 Frame = -3

Query: 663 PVKLPAWQCPRTGSRGSFKRRRAFPPRHHSARLERNTVRPPILSTAHRFRPTSK 502
           P +L AW C  +      KR        H  R +     PPIL   H F  TS+
Sbjct: 692 PYRLNAWNCYYSVISRLGKRASTEAKFMHHLRSKYRDCVPPILIAGHHFTVTSR 745


>At3g62370.1 68416.m07006 expressed protein
          Length = 361

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -1

Query: 656 NSPPGSVL--EPDHAGVLNGDERFRHVTTLHAWN 561
           N+ PG +    P   G  NG +RF H+  ++AWN
Sbjct: 160 NAIPGRLYGGNPIDNGEGNGGDRFGHLVDIYAWN 193


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,983,395
Number of Sequences: 28952
Number of extensions: 391335
Number of successful extensions: 1072
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1036
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)