Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0203
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    31   0.12 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    29   0.65 
SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2 |Sc...    27   3.5  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    26   6.1  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   6.1  
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    25   8.0  
SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyce...    25   8.0  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   8.0  
SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyce...    25   8.0  

>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 31.5 bits (68), Expect = 0.12
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 439 SGCGRCRVWSMFVRYVRFSELVFYIMRPQKLYIF 540
           +GCG+  VW  +VR+V F E          LY++
Sbjct: 108 NGCGKSYVWPSYVRFVDFDERYTRFANKYSLYLY 141


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -2

Query: 661 ADRARNETDTTLRLRKIRGRPENAGPDPVRNVRRFSRV 548
           AD   + T  +   R I GRPEN G   ++N+ R S+V
Sbjct: 201 ADEKLSATVASEGARTIPGRPENGGNCDIKNLSRGSKV 238


>SPBC725.11c |php2||CCAAT-binding factor complex subunit Php2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = +1

Query: 166 PWNPIEGRYGSEREEHRICGGVRILSADLEIQVRDVRGDVAP 291
           P+ P+EG Y + ++ HRI    R   A LE ++R V+    P
Sbjct: 3   PYEPVEGLYVNAKQYHRILKR-REARAKLEERLRGVQTTKKP 43


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/44 (36%), Positives = 18/44 (40%)
 Frame = -3

Query: 279 STYIPHLNFKVRREYPDTAANAVLFAFRTISPFYRIPWNSNAQA 148
           STY P L   V     D   N     F  I+P+Y   WN  A A
Sbjct: 257 STYWPALAAPVYPSMKDVPNNPFT-PFSPINPYYAKSWNHTASA 299


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 218 MRCSSRSEPYLPSI-GFHGTRTLRQKRKLFPDLSAASSGHFGLPRRT 81
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 476 TNIDQTRHRPHPLPVQTRHAPV 411
           +N+D  +  PHP P Q    PV
Sbjct: 100 SNLDSVKSLPHPWPFQKESRPV 121


>SPCC11E10.03 |mug1||dynactin complex subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 351

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 364 FPYLHYSID*RLFTLETCCGYGYEPARHL 278
           +P+   S+D R+F LE+  GY  EP   L
Sbjct: 159 YPFDLDSLDKRIFKLESKIGYADEPLSEL 187


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = -2

Query: 265 SPEFQGPQRVSGHRRKCGALRVPNHISLL*DSMELERSGRKENSSRTSRRRLQA 104
           +P  + P  VSGH      LR+   IS    SM +ERS       R ++  + +
Sbjct: 611 TPLAKKPLPVSGHTNNAHPLRLSTEISASQLSMIIERSVELSKHKRLNKELIDS 664


>SPAC30D11.01c ||SPAC56F8.01|alpha-glucosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 993

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
 Frame = -1

Query: 446 HPLPVQTRHAPVLRANPYSEVTDPICRLPLPTLFYRLEALH-----LGDLLRIWVRTGAT 282
           HP  ++ R+ P+   N Y+  +  +  L    +   L + +     +G ++ ++V +G+T
Sbjct: 254 HPFYMEQRYIPIGTTNTYTSASHGVLMLSSNGMEVLLRSTYIKYRMIGGIIDLFVYSGST 313

Query: 281 -SPRTSLT*ISRSAESIRTP 225
            SP+ +   I +  +SI TP
Sbjct: 314 VSPKYT---IQQYVQSIGTP 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,764
Number of Sequences: 5004
Number of extensions: 66075
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)