Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0201
         (378 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5K6G8 Cluster: DEAD/DEAH box helicase, putative; n=2; ...    33   1.3  
UniRef50_Q8I3L3 Cluster: Putative uncharacterized protein PFE125...    31   5.4  
UniRef50_O14208 Cluster: Uncharacterized protein C6B12.03c; n=1;...    31   7.1  
UniRef50_A0DU33 Cluster: Chromosome undetermined scaffold_64, wh...    31   9.4  

>UniRef50_A5K6G8 Cluster: DEAD/DEAH box helicase, putative; n=2;
            Plasmodium|Rep: DEAD/DEAH box helicase, putative -
            Plasmodium vivax
          Length = 1393

 Score = 33.5 bits (73), Expect = 1.3
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = +2

Query: 233  FYLLALTKVFYLEILKYQQNYSLNLIDFNHSLICK-NSALN 352
            FY + + +  YLE LK  + YS N+ + ++ L+CK N+ +N
Sbjct: 1140 FYSVLINQADYLEALKKSKCYSCNMREKHYELVCKRNNCIN 1180


>UniRef50_Q8I3L3 Cluster: Putative uncharacterized protein PFE1255w;
           n=2; root|Rep: Putative uncharacterized protein PFE1255w
           - Plasmodium falciparum (isolate 3D7)
          Length = 1849

 Score = 31.5 bits (68), Expect = 5.4
 Identities = 20/59 (33%), Positives = 29/59 (49%)
 Frame = -2

Query: 251 LKRVSKNVKM*TCSNYLFFFNAGESIYGYPVEGDVLITYLCKFSSS*SKVQCFKSFQNM 75
           +K   KN K   CS  +F  N+G + Y   + GDV+I     FSS  SK   +   +N+
Sbjct: 289 IKDYDKNKKNLVCSIEIFLSNSGNNAYNRDIYGDVIIIKR-MFSSHTSKFYLYGLKKNI 346


>UniRef50_O14208 Cluster: Uncharacterized protein C6B12.03c; n=1;
           Schizosaccharomyces pombe|Rep: Uncharacterized protein
           C6B12.03c - Schizosaccharomyces pombe (Fission yeast)
          Length = 302

 Score = 31.1 bits (67), Expect = 7.1
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 206 N*NMSTFLHFYLLALTKVFYLEILKY 283
           N N S+FLH YL+ +  +FYLEIL Y
Sbjct: 171 NSNESSFLH-YLVEVWSIFYLEILPY 195


>UniRef50_A0DU33 Cluster: Chromosome undetermined scaffold_64, whole
            genome shotgun sequence; n=1; Paramecium tetraurelia|Rep:
            Chromosome undetermined scaffold_64, whole genome shotgun
            sequence - Paramecium tetraurelia
          Length = 3036

 Score = 30.7 bits (66), Expect = 9.4
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = +2

Query: 218  STFLHFYLLALTKVFYLEI-LKYQ--QNYSLNLIDFNHSLICKNSAL 349
            S  L   L+    +FY ++ LKYQ  ++Y LNL+D+  +LIC  S +
Sbjct: 2837 SIILKGSLIYFILLFYQQLNLKYQPFKSYRLNLLDYQSTLICGASII 2883


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 302,618,082
Number of Sequences: 1657284
Number of extensions: 5113682
Number of successful extensions: 9233
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9232
length of database: 575,637,011
effective HSP length: 91
effective length of database: 424,824,167
effective search space used: 14444021678
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)