Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0201
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|ch...    31   0.060
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   3.0  
SPBC609.02 |ptn1||phosphatidylinositol-3,4,5-trisphosphate3-phos...    25   5.2  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    24   9.1  

>SPAC6B12.03c |||HbrB family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 302

 Score = 31.1 bits (67), Expect = 0.060
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +2

Query: 206 N*NMSTFLHFYLLALTKVFYLEILKY 283
           N N S+FLH YL+ +  +FYLEIL Y
Sbjct: 171 NSNESSFLH-YLVEVWSIFYLEILPY 195


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 3.0
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 155 PRPGIRKWIPQR*KKKGN*NMSTFLHFYLLALTKVFYLEILKYQQNYSLNLIDFNHSL 328
           PRP +   +P      G+  +S      LLAL + + + I++ +  Y L + D+N SL
Sbjct: 203 PRPHVLYTVPTGQNPTGS-TLSLSRRKKLLALARKYDIIIVEDEPYYFLQMEDYNGSL 259


>SPBC609.02 |ptn1||phosphatidylinositol-3,4,
           5-trisphosphate3-phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 257 VFYLEILKYQQNYSLNLIDFN 319
           V+Y+EILK   NY L  ++FN
Sbjct: 179 VYYIEILKQFPNY-LKAVEFN 198


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 263  YLEILKYQQNYSLNLIDFNHSLICKNSALN 352
            +   +KY+Q Y +NL DF  +L+    A++
Sbjct: 4276 FSNFVKYRQ-YQINLKDFRENLLLTEEAIS 4304


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,365,637
Number of Sequences: 5004
Number of extensions: 24979
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)