Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0201
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine rece...    28   1.9  
AF003148-9|AAB54207.2|  347|Caenorhabditis elegans Hypothetical ...    28   1.9  
AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical ...    28   2.5  
Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical pr...    27   3.4  

>U41996-1|AAA83471.2|  306|Caenorhabditis elegans Serpentine
           receptor, class sx protein22 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 215 MSTFLHFYLLALTKVFYLEILKYQQNYSLNLIDFNHSLICKNSALNMF 358
           +S ++  + LAL  +F   +LK    + + L     SLI  NS++N+F
Sbjct: 216 ISLYVCTWFLALLVIFCTYVLKMDNPFVIALESVTGSLILCNSSMNIF 263


>AF003148-9|AAB54207.2|  347|Caenorhabditis elegans Hypothetical
           protein F32B5.2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = -2

Query: 290 FAGTLEFLDKTLLLK-RVSKNVKM*TCSNYLFFFNAGESIYGYPVE 156
           F G+L +L    L+   V K+V +  CS+   + +A  + + YPV+
Sbjct: 9   FTGSLAYLSSARLINSEVVKDVSVYLCSHIPTYSHANMNFFSYPVQ 54


>AF016688-7|AAB66080.1|  726|Caenorhabditis elegans Hypothetical
           protein F18A12.1 protein.
          Length = 726

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 13/49 (26%), Positives = 26/49 (53%)
 Frame = -2

Query: 272 FLDKTLLLKRVSKNVKM*TCSNYLFFFNAGESIYGYPVEGDVLITYLCK 126
           F D+ + L+++ K+    T +NYL F+    ++ G  V  +V+    C+
Sbjct: 345 FFDEKMNLEKLLKSTPKRTLANYLIFYYMDHAMNGLSVHDNVIKKRNCE 393


>Z78417-9|CAI70407.1|  700|Caenorhabditis elegans Hypothetical
           protein C35C5.11 protein.
          Length = 700

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 269 EILKYQQNYSLNLIDFNHSLICKNSALNMFF 361
           E+LKY +  S  +   N + IC   +LN FF
Sbjct: 668 ELLKYSKQLSKEIAFVNVAFICAKHSLNEFF 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,423,071
Number of Sequences: 27780
Number of extensions: 134650
Number of successful extensions: 238
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)