Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0201
         (378 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1, ...    27   4.1  
At5g28740.1 68418.m03530 transcription-coupled DNA repair protei...    26   9.6  

>At5g17740.1 68418.m02080 AAA-type ATPase family protein h-bcs1,
           Homo sapiens, EMBL:AF026849 h-bcs1, Homo sapiens,
           EMBL:AF026849 h-bcs1, Homo sapiens, EMBL:AF026849
           contains Pfam profile: ATPase family PF00004
           gene_id:K17E7.100 contains Pfam profile: ATPase family
           PF00004
          Length = 533

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 8/21 (38%), Positives = 17/21 (80%)
 Frame = +3

Query: 48  RLFISNCYSHVLKTFETLNFR 110
           R+   +CYSH+ +T++++NF+
Sbjct: 185 RILKMHCYSHMAQTWQSVNFK 205


>At5g28740.1 68418.m03530 transcription-coupled DNA repair
           protein-related similar to XAB2 (XPA-binding protein 2)
           [Homo sapiens] GI:10566459
          Length = 917

 Score = 25.8 bits (54), Expect = 9.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -2

Query: 194 FNAGESIYGYPVEGDVLITYLCKF 123
           +  G  I+ YP   D+ +TYL KF
Sbjct: 572 YERGVKIFKYPHVKDIWVTYLTKF 595


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,721,559
Number of Sequences: 28952
Number of extensions: 116883
Number of successful extensions: 188
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 12,070,560
effective HSP length: 73
effective length of database: 9,957,064
effective search space used: 517767328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)