Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbVm0200
         (720 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0110 + 25914110-25915006,25915726-25915797,25916411-259166...    32   0.53 
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309...    31   0.92 
06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,890...    29   3.7  
09_06_0045 + 20462866-20463309,20463417-20463722,20465262-204654...    28   6.5  
02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    28   6.5  
12_02_0854 + 23697826-23698033,23699111-23699276,23699430-236994...    28   8.6  
12_01_0655 + 5546293-5546478,5546760-5546877,5550697-5550776,555...    28   8.6  
04_04_0433 + 25163111-25163471,25163943-25164154,25164420-251647...    28   8.6  

>02_05_0110 +
           25914110-25915006,25915726-25915797,25916411-25916699,
           25916864-25916949,25917267-25917490,25917674-25917740,
           25917830-25917889,25917995-25918078,25918475-25918555
          Length = 619

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 18/38 (47%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = -2

Query: 515 ASQLDDEAFGYL-KRVIVTPAVYPRLLEFLHVDIQSTG 405
           A +LDDE   YL  R  V   +  RLL+F++VD  STG
Sbjct: 276 AMELDDEDISYLTNRAAVYIEMGKRLLKFIYVDPSSTG 313


>03_04_0090 +
           17228253-17228403,17229062-17229129,17229238-17230902,
           17231002-17231143,17231648-17232399
          Length = 925

 Score = 31.1 bits (67), Expect = 0.92
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 6/33 (18%)
 Frame = -2

Query: 95  TNIDQTRH------RPHPLPVQTRHAPVLRANP 15
           T IDQ  H      + H +PVQ  H+PVL+ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356


>06_01_1087 + 8901950-8902102,8902960-8903996,8904438-8904586,
            8905437-8905690,8905785-8908799,8908889-8909001,
            8909975-8910164,8910399-8910512,8910591-8910698,
            8910941-8911073,8911206-8911408,8911626-8911826
          Length = 1889

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 508  CDAHEWINEIPTVPIYYLAKPQPRE 582
            CD  EW N  PT+   ++ + +PRE
Sbjct: 1402 CDEGEWYNNFPTIDENHVQRNKPRE 1426


>09_06_0045 +
           20462866-20463309,20463417-20463722,20465262-20465423,
           20465539-20465814,20466149-20466499
          Length = 512

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -2

Query: 704 SATIARNDLPLYATPLMSPYNARLESSSTGSSFPADSPQARSLGCGF 564
           ++ + R+D P YA  L++   +  E +       +D P+ R+ GC F
Sbjct: 194 ASMVFRDDDPAYAARLLAGARSAFEFADEHKGAYSDDPELRAGGCPF 240


>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = -2

Query: 545 TVGISLIHSCASQLDDEAFGYLKRVIVTPAVYPRLLEFLHVDIQSTGQKSHCVNTREGHR 366
           T G+ ++     Q +   F +  ++ V   +  RL++F+ VD+     +   V+ R+G R
Sbjct: 10  TCGLRIMPDMEHQSEGRFFAWHIQIEVDHMLSERLMQFIDVDLHGVKAREKFVSVRKGTR 69


>12_02_0854 +
          23697826-23698033,23699111-23699276,23699430-23699466,
          23699531-23700145
          Length = 341

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/25 (60%), Positives = 16/25 (64%)
 Frame = -3

Query: 97 ARTSTRPGTGRIRFPSKPDTPRSSE 23
          A TST PG GR R PS P TP  S+
Sbjct: 16 AATSTDPGRGRKRPPS-PSTPTPSD 39


>12_01_0655 +
           5546293-5546478,5546760-5546877,5550697-5550776,
           5551329-5552345,5552523-5553344,5553528-5553800
          Length = 831

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/43 (34%), Positives = 19/43 (44%)
 Frame = +2

Query: 287 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC*RNVISAQCS 415
           C T   RS  N H   +  CL+  +H     G   NVI  +CS
Sbjct: 242 CDTERARSDTNEHNIYDGCCLLDVQHTQSFPGNGANVIPTKCS 284


>04_04_0433 +
           25163111-25163471,25163943-25164154,25164420-25164701,
           25164794-25164916,25165511-25165664,25165754-25165965,
           25166143-25166212,25166294-25166424
          Length = 514

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 287 CTTAVQRSAQNWHGQGESDCLIKTKHCDGPRGC-*RNVISAQCS 415
           CT++ +R A  W G G    L    HC  P       V+S +CS
Sbjct: 26  CTSSSRRRASPWGGAGRLIRLRLRGHCPSPASARAARVVSPRCS 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,452,267
Number of Sequences: 37544
Number of extensions: 428104
Number of successful extensions: 1289
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)