Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbVm0200
(720 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35) 63 2e-10
SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5) 47 2e-05
SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05
SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.003
SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4) 32 0.41
SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19) 32 0.41
SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97) 30 1.6
SB_10665| Best HMM Match : PT (HMM E-Value=6.2) 30 1.6
SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6) 29 2.9
SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16) 29 3.8
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 29 3.8
SB_38261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
>SB_42131| Best HMM Match : 7tm_1 (HMM E-Value=8.5e-35)
Length = 521
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/35 (77%), Positives = 30/35 (85%)
Frame = -1
Query: 420 HSEHWAEITLRQHPRGPSQCFVLIRQSDSPCPCQF 316
++EHWAEITLRQH PSQCFVLI+QSDSP CQF
Sbjct: 48 NNEHWAEITLRQHRFRPSQCFVLIKQSDSPSHCQF 82
>SB_32812| Best HMM Match : CfAFP (HMM E-Value=9.5)
Length = 167
Score = 46.8 bits (106), Expect = 2e-05
Identities = 21/24 (87%), Positives = 22/24 (91%)
Frame = +3
Query: 408 SALNVNVKKFKQARVNGGSNYDSL 479
+ALNV VKKF QARVNGGSNYDSL
Sbjct: 28 AALNVKVKKFNQARVNGGSNYDSL 51
>SB_30799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 46.4 bits (105), Expect = 2e-05
Identities = 21/27 (77%), Positives = 23/27 (85%)
Frame = -2
Query: 677 PLYATPLMSPYNARLESSSTGSSFPAD 597
P Y+TPLMS + RLESSSTGSSFPAD
Sbjct: 89 PTYSTPLMSFHRVRLESSSTGSSFPAD 115
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = -3
Query: 604 PLILPKPVPLAVVSLDSR 551
P KPVPLAVVSLDSR
Sbjct: 113 PADCAKPVPLAVVSLDSR 130
>SB_11908| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 43.2 bits (97), Expect = 2e-04
Identities = 20/23 (86%), Positives = 20/23 (86%)
Frame = +3
Query: 411 ALNVNVKKFKQARVNGGSNYDSL 479
ALNV VKKF QARVNG SNYDSL
Sbjct: 2 ALNVKVKKFNQARVNGWSNYDSL 24
>SB_40229| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 144
Score = 39.5 bits (88), Expect = 0.003
Identities = 18/24 (75%), Positives = 19/24 (79%)
Frame = +3
Query: 405 PSALNVNVKKFKQARVNGGSNYDS 476
PSALNV VKKF QARVNGG +S
Sbjct: 31 PSALNVKVKKFNQARVNGGDPLES 54
>SB_53001| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 37.9 bits (84), Expect = 0.008
Identities = 15/20 (75%), Positives = 16/20 (80%)
Frame = +1
Query: 511 DAHEWINEIPTVPIYYLAKP 570
DAHEWINEIPTVPI +P
Sbjct: 8 DAHEWINEIPTVPIIEFLQP 27
>SB_57048| Best HMM Match : S-antigen (HMM E-Value=3.4)
Length = 242
Score = 32.3 bits (70), Expect = 0.41
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Frame = -2
Query: 278 PIAHETKPHDLTARKIRGRPENA-------GPDPVRNVRRFSRVSY*IYTVFEAALY*NT 120
P H+T PH T + G + DP R R +R + +T +
Sbjct: 89 PHGHDTDPHTDTTQTPHGHDTDPTQTQHGHDTDPTRTRHRPTRRRHEPHTDPTRTRHEPH 148
Query: 119 NSLKRT*RTNIDQTRHRPHPLPVQTRHAP 33
RT T+ QT+HRP+ P QT+H P
Sbjct: 149 TDTTRT-HTDPTQTQHRPNTDPTQTQHRP 176
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 95 TNIDQTRHRPHPLPVQTRHAP 33
T+ QT+HRPH P QT H P
Sbjct: 167 TDPTQTQHRPHTDPTQTPHGP 187
>SB_32009| Best HMM Match : PKD (HMM E-Value=1.9e-19)
Length = 3083
Score = 32.3 bits (70), Expect = 0.41
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +1
Query: 433 NSSKRG*TAGVTMTLLR*PNASSSNCDAHEWINEIPTVPIYYLAKP 570
NS+ T G T+ NA+ S DA + +P VPIYY + P
Sbjct: 173 NSTLNNQTIGYNNTVNVTTNATESEIDALNFTVPLPNVPIYYFSNP 218
>SB_58248| Best HMM Match : Pox_A32 (HMM E-Value=0.97)
Length = 540
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Frame = +2
Query: 38 RVGFGREADAAGAGSGRCSCVMFVLAS*YFNIMRPQ--KLYIFNMTLAKIVLRFGLDP 205
R G E +G+G +C MFV+A N+M Q + T ++ R G+DP
Sbjct: 154 RDGVHLEIKRTASGTGTVNCHMFVVADALMNLMNGQLESIQYLAHTPERVSARSGMDP 211
>SB_10665| Best HMM Match : PT (HMM E-Value=6.2)
Length = 215
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = -2
Query: 95 TNIDQTRHRPHPLPVQTRHAP 33
TN QT+H PH P QT H P
Sbjct: 111 TNPTQTQHGPHTNPTQTPHGP 131
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = -2
Query: 95 TNIDQTRHRPHPLPVQTRHAP 33
T+ +TRH PH P +TRH P
Sbjct: 23 TDPTRTRHGPHTDPTRTRHGP 43
>SB_6267| Best HMM Match : DUF930 (HMM E-Value=3.6)
Length = 502
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = -2
Query: 296 RSYRIVPIAHETKPHDLTARKIRGR--PENAGPDPVRN 189
R +R+ P +E PHD RK RG+ P + PD +R+
Sbjct: 91 RRHRLRPHTNEHHPHDCGPRKDRGKCNPGDHRPDRIRH 128
>SB_8661| Best HMM Match : Band_7 (HMM E-Value=3.7e-16)
Length = 500
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = -2
Query: 692 ARNDLPLYATPLMSPYNARLESSSTGSSFPADSPQARSLGC 570
A +D+ L T L+ +A L SSST S+F P+A++ C
Sbjct: 242 AGSDITLVITRLIVGLSASLHSSSTESTFEGLHPEAQAHPC 282
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 29.1 bits (62), Expect = 3.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +2
Query: 335 ESDCLIKTKHCDGPRGC*RNVISAQCSE 418
E DC+ +KHCDG C C E
Sbjct: 73 EGDCIPLSKHCDGTWDCQHGTDEMDCQE 100
>SB_38261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 231
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = -3
Query: 109 NEHNARTSTRPGTG-RIRFPSKPDTPRSSEPILIPKL 2
N H A R G+ R R PS+ D+P++++P +I ++
Sbjct: 185 NMHEAILGARMGSASRDRHPSESDSPKATKPAVITRI 221
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,973,843
Number of Sequences: 59808
Number of extensions: 474646
Number of successful extensions: 1343
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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